cluster # 291

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Schistosoma mansoni
cluster # 291 cluster # 291 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_291#0 length = 789 sequences # 1

consensus_291#1 length = 231 sequences # 1

consensusID : consensus_291#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 789
fasta sequence

                              [CTCGAGGCCAANAATTTGGCACGAGGGGTTGTGATTGGGTCATACTTGGACATTCTGAGCGTAGAAACATTTTTGGTGAATCTGATGAACTTATTGCTGAAAAAGTTCAACATGCACTTGCTGAAGGTCTAAGCGTTATTGCATGTATTGGTGAAACATTATCAGAGCGTGAATCTAATAAAACAGAGGAAGTATGCGTTAGACAGTTAAAAGCTATTGCAAATAAGATTAAATCAGCTGATGAATGGAAACGAGTAGTTGTAGCATATGAACCAGTTTGGGCTATTGGAACAGGTAAAGTTGCTACACCACAACAAGCTCAAGAAGTTCATAATTTCCTTCGTAAATGGTTTAAAACGAATGCACCAAATGGAGTTGATGAAAAAATACGTATTATCTATGGTGGATCTGTAACTGCTGCCAATTGTAAAGAATTAGCTCAACAACATGATGTCGATGGATTTTTGGTTGGTGGAGCTTCATTAAAACCGGAATTCACTGAGATATGTAAAGCCAGACAACGTTGAACGTTTTGTTGGTCTTCTTCTTCTTACGCTTCTAAATTTTGTCTCTTCTCATGTCAGTTACTTGCTTTTTTTGTCTTGTTTTTTTGTTTTGACAACCAAAGCATATTATAATTAGTAGTATCTTAATGTCTAATGTAAAAAAATATCACCACTAGTTCGAACTATNTAATTACTATCAGTCAAAAAAATATATTTGTCAATTTAGTTCATTGTTTCATTNATCGNCCCTTCTATTTAAATTTCTTATGCCCTAAATATACCC]

[+] EMBL CD081309             [CTCGAGGCCAANAATTTGGCACGAGGGGTTGTGATTGGGTCATACTTGGACATTCTGAGCGTAGAAACATTTTTGGTGAATCTGATGAACTTATTGCTGAAAAAGTTCAACATGCACTTGCTGAAGGTCTAAGCGTTATTGCATGTATTGGTGAAACATTATCAGAGCGTGAATCTAATAAAACAGAGGAAGTATGCGTTAGACAGTTAAAAGCTATTGCAAATAAGATTAAATCAGCTGATGAATGGAAACGAGTAGTTGTAGCATATGAACCAGTTTGGGCTATTGGAACAGGTAAAGTTGCTACACCACAACAAGCTCAAGAAGTTCATAATTTCCTTCGTAAATGGTTTAAAACGAATGCACCAAATGGAGTTGATGAAAAAATACGTATTATCTATGGTGGATCTGTAACTGCTGCCAATTGTAAAGAATTAGCTCAACAACATGATGTCGATGGATTTTTGGTTGGTGGAGCTTCATTAAAACCGGAATTCACTGAGATATGTAAAGCCAGACAACGTTGAACGTTTTGTTGGTCTTCTTCTTCTTACGCTTCTAAATTTTGTCTCTTCTCATGTCAGTTACTTGCTTTTTTTGTCTTGTTTTTTTGTTTTGACAACCAAAGCATATTATAATTAGTAGTATCTTAATGTCTAATGTAAAAAAATATCACCACTAGTTCGAACTATNTAATTACTATCAGTCAAAAAAATATATTTGTCAATTTAGTTCATTGTTTCATTNATCGNCCCTTCTATTTAAATTTCTTATGCCCTAAATATACCC]




>consensus_291#0
CTCGAGGCCAANAATTTGGCACGAGGGGTTGTGATTGGGTCATACTTGGACATTCTGAGC
GTAGAAACATTTTTGGTGAATCTGATGAACTTATTGCTGAAAAAGTTCAACATGCACTTG
CTGAAGGTCTAAGCGTTATTGCATGTATTGGTGAAACATTATCAGAGCGTGAATCTAATA
AAACAGAGGAAGTATGCGTTAGACAGTTAAAAGCTATTGCAAATAAGATTAAATCAGCTG
ATGAATGGAAACGAGTAGTTGTAGCATATGAACCAGTTTGGGCTATTGGAACAGGTAAAG
TTGCTACACCACAACAAGCTCAAGAAGTTCATAATTTCCTTCGTAAATGGTTTAAAACGA
ATGCACCAAATGGAGTTGATGAAAAAATACGTATTATCTATGGTGGATCTGTAACTGCTG
CCAATTGTAAAGAATTAGCTCAACAACATGATGTCGATGGATTTTTGGTTGGTGGAGCTT
CATTAAAACCGGAATTCACTGAGATATGTAAAGCCAGACAACGTTGAACGTTTTGTTGGT
CTTCTTCTTCTTACGCTTCTAAATTTTGTCTCTTCTCATGTCAGTTACTTGCTTTTTTTG
TCTTGTTTTTTTGTTTTGACAACCAAAGCATATTATAATTAGTAGTATCTTAATGTCTAA
TGTAAAAAAATATCACCACTAGTTCGAACTATNTAATTACTATCAGTCAAAAAAATATAT
TTGTCAATTTAGTTCATTGTTTCATTNATCGNCCCTTCTATTTAAATTTCTTATGCCCTA
AATATACCC

consensusID : consensus_291#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 231
fasta sequence

                              [AGTACAAGAGTTAATGGAATTTTTGCACACCAGTTAACTGTCCATTCAAAAAAGAACAAGTTAAGAAGTTTAGTAAGCAGCCTAACTAAAGACTAGGAGTAGGACAACTAAATCATGACTTGAACTCTTGATGTTTATGCTTATAATTTGTAAGTTAGTAGTGTTCTTTATAATAATAGTAATTTAATTTATAAAAAAAAAAAAAAAAAAAAATAGTGGCTAAGAACATGA]

[+] EMBL AA952811             [AGTACAAGAGTTAATGGAATTTTTGCACACCAGTTAACTGTCCATTCAAAAAAGAACAAGTTAAGAAGTTTAGTAAGCAGCCTAACTAAAGACTAGGAGTAGGACAACTAAATCATGACTTGAACTCTTGATGTTTATGCTTATAATTTGTAAGTTAGTAGTGTTCTTTATAATAATAGTAATTTAATTTATAAAAAAAAAAAAAAAAAAAAATAGTGGCTAAGAACATGA]




>consensus_291#1
AGTACAAGAGTTAATGGAATTTTTGCACACCAGTTAACTGTCCATTCAAAAAAGAACAAG
TTAAGAAGTTTAGTAAGCAGCCTAACTAAAGACTAGGAGTAGGACAACTAAATCATGACT
TGAACTCTTGATGTTTATGCTTATAATTTGTAAGTTAGTAGTGTTCTTTATAATAATAGT
AATTTAATTTATAAAAAAAAAAAAAAAAAAAAATAGTGGCTAAGAACATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_291#0      CTCGAGGCCAANAATTTGGCACGAGGGGTTGTGATTGGGTCATACTTGGACATTCTGAGC 60
consensus_291#1      ------------------------------------------------------------
                                                                                 

consensus_291#0      GTAGAAACATTTTTGGTGAATCTGATGAACTTATTGCTGAAAAAGTTCAACATGCACTTG 120
consensus_291#1      ------------------------------------------------------------
                                                                                 

consensus_291#0      CTGAAGGTCTAAGCGTTATTGCATGTATTGGTGAAACATTATCAGAGCGTGAATCTAATA 180
consensus_291#1      -----------------------------------------------------AGTACAA 7
                                                                            **  *

consensus_291#0      AAACAGAGGAAGTATGCGTTAGACAGTTAAAAGCTATTGCAAATAAGATTAAATCAGCTG 240
consensus_291#1      GAGTTAATGGAATTTTTGCACACCAGTTAACTGTCCATTCAAAAAAGAACAAGTTAAGAA 67
                      *    * * * * *  *     *******  *    * **** ****  ** * *    

consensus_291#0      ATGAATGGAAACGAGTAGTTGTAGCATATGAACCAGTTTGGGCTATTGGAACAGGTAAAG 300
consensus_291#1      GTTTAGTAAGCAGCCTAACTAAAGACTAGGAGTAGGACAACTAAATCATGACTTGAACTC 127
                      *  *   *   *  **  *  **  ** **    *        **    **  * *   

consensus_291#0      TTGCTACACCACAACAAGCTCAAGAAGTTCATAATTTCCTTCGTAAATGGTTTAAAACGA 360
consensus_291#1      TTGATGTTTATGCTTATAATTTGTAAGTTAGTAGTGTTCTTTATAA-TAATAGTAATTTA 186
                     *** *          *   *    *****  ** * * ***  *** *  *   **   *

consensus_291#0      ATGCACCAAATGGAGTTGATGAAAAAATACGTATTATCTATGGTGGATCTGTAACTGCTG 420
consensus_291#1      ATTTATAAAAAAAAAAAAAAAAAAAAATAGTGGCTAAGAACA-TGA-------------- 231
                     **  *  ***   *    *  ********     **   *   **               

consensus_291#0      CCAATTGTAAAGAATTAGCTCAACAACATGATGTCGATGGATTTTTGGTTGGTGGAGCTT 480
consensus_291#1      ------------------------------------------------------------
                                                                                 

consensus_291#0      CATTAAAACCGGAATTCACTGAGATATGTAAAGCCAGACAACGTTGAACGTTTTGTTGGT 540
consensus_291#1      ------------------------------------------------------------
                                                                                 

consensus_291#0      CTTCTTCTTCTTACGCTTCTAAATTTTGTCTCTTCTCATGTCAGTTACTTGCTTTTTTTG 600
consensus_291#1      ------------------------------------------------------------
                                                                                 

consensus_291#0      TCTTGTTTTTTTGTTTTGACAACCAAAGCATATTATAATTAGTAGTATCTTAATGTCTAA 660
consensus_291#1      ------------------------------------------------------------
                                                                                 

consensus_291#0      TGTAAAAAAATATCACCACTAGTTCGAACTATNTAATTACTATCAGTCAAAAAAATATAT 720
consensus_291#1      ------------------------------------------------------------
                                                                                 

consensus_291#0      TTGTCAATTTAGTTCATTGTTTCATTNATCGNCCCTTCTATTTAAATTTCTTATGCCCTA 780
consensus_291#1      ------------------------------------------------------------
                                                                                 

consensus_291#0      AATATACCC 789
consensus_291#1      ---------