These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2934#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [TTCATTGGATTTATCAATCACCTCTTTTTCTTTCTTTAACTGAACTTCTGGTGCGTCCTCAACGTTGTCTATTCTTTTGCGTTTGTCCCTGAGTGTGAGACACTCTGTAACGCATTCTTTGGGTGTTATTATATTTCTCATTTGTTTTTCAACTGCTTCTTTCCCTAAATTGACCATCGATATTTCCGCATCCAATTGTGAGTGAGCTAATTCCAAAATATCTTTCAAGTCTTTTATGGCATTGATTCTGTCTGCAAGTCTTGTTGTGTTGTTAAATTCATCCCATTTAGACTTAAGAGCAGCTGCTAGGCGTAAAGAACGTGTTTCTTGTCTGATTTGCTC] [+] EMBL CD098032 [TTCATTGGATTTATCAATCACCTCTTTTTCTTTCTTTAACTGAACTTCTGGTGCGTCCTCAACGTTGTCTATTCTTTTGCGTTTGTCCCTGAGTGTGAGACACTCTGTAACGCATTCTTTGGGTGTTATTATATTTCTCATTTGTTTTTCAACTGCTTCTTTCCCTAAATTGACCATCGATATTTCCGCATCCAATTGTGAGTGAGCTAATTCCAAAATATCTTTCAAGTCTTTTATGGCATTGATTCTGTCTGCAAGTCTTGTTGTGTTGTTAAATTCATCCCATTTAGACTTAAGAGCAGCTGCTAGGCGTAAAGAACGTGTTTCTTGTCTGATTTGCTC] consensusID : consensus_2934#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence [TGGGATGGGCTTGAAAGAAACTCCTGGACAATTAGGTCTCAGTTTGTACTGTTCAATGTCGATGTCCATGGCAGCATGCTTATCCTGTAGATCAAGTAATACTTGCTGCCTAGCCTCTTTAAGAAGATCATTCGTTCAAATGCCTCATCCACTTTCTGCTGAAGATTTTTATTGGATTTATCAATCACCTCTTTTTCTT] [+] EMBL CD125635 [TGGGATGGGCTTGAAAGAAACTCCTGGACAATTAGGTCTCAGTTTGTACTGTTCAATGTCGATGTCCATGGCAGCATGCTTATCCTGTAGATCAAGTAATACTTGCTGCCTAGCCTCTTTAAGAAGATCATTCGTTCAAATGCCTCATCCACTTTCTGCTGAAGATTTTTATTGGATTTATCAATCACCTCTTTTTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2934#0 TTCATTGGATTTATCAATCACCTCTTTTTCTTTCTTTAACTGAACTTCTGGTGCGTCCTC 60 consensus_2934#1 ------------------------TGGGATGGGCTTGAAAGAAACTCCTGG-ACAATTAG 35 * *** ** **** **** * consensus_2934#0 AACGTTGTCTATTCTTTTGCGTTTGTCCCTGAGTGTGAGACACTCTGTAACGCATTCTTT 120 consensus_2934#1 GTCTCAGTTTGTACTGTTCAAT--GTCGATGTCCATGGCAGCATGCTTATCCTGTAGATC 93 * ** * * ** ** * *** ** ** * * ** * * * consensus_2934#0 GGGTGTTATTATATTTCTCATTTGTTTTTCAACTGCTTCTTTCCCTAAATTGACCATCGA 180 consensus_2934#1 AAGTAATACT-TGCTGCCTAGCC-TCTTTAAGAAGATCATTCGTTCAAATGCCTCATCCA 151 ** ** * * * * * * *** * * * ** **** **** * consensus_2934#0 TATTTCCGCATCCAATTGTGAGTGAGCTAATTCCAAAATATCTTTCAAGTCTTTTATGGC 240 consensus_2934#1 C-TTTCTGCTGAAGATTTTTATTGGATTTAT-CAATCACCTCTTTT---TCTT------- 199 **** ** *** * * ** * ** * * * ***** **** consensus_2934#0 ATTGATTCTGTCTGCAAGTCTTGTTGTGTTGTTAAATTCATCCCATTTAGACTTAAGAGC 300 consensus_2934#1 ------------------------------------------------------------ consensus_2934#0 AGCTGCTAGGCGTAAAGAACGTGTTTCTTGTCTGATTTGCTC 342 consensus_2934#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||