cluster # 2946

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Schistosoma mansoni
cluster # 2946 cluster # 2946 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2946#0 length = 455 sequences # 1

consensus_2946#1 length = 438 sequences # 1

consensusID : consensus_2946#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence

                              [CCGATGTTTCAAGAAGTTTTATTACCGTCTACTTTATATCTCCAAGTATTACGTGCGAAAGTACTTCATTTACTTGCAAATGTCAAAGAACAGGTTTTATTAAAAAGTCGGAAACAGAACGTTCGTATATCCCTGTCCTTATTTCATCAGGCTCTCTTATCTCGCGCTTCTGAAGTCAGTACAGCAATGGTGTATATGGTGTCTACTGGGAATCTTCCTCCCTCATGTAAATCTACTCTTTCCGCTCAGCTTAGCGGGCAATCAACTGGCTTAAGTGTTCCGGCGGATAATGTTAATTTTCTTCGATTCGCTGCACAATTTCGAGCTGTTCACCGAGGGGCATTTTTCACAGAAATGCGAACTACTTCAGTTCGTCGTTTACTGCCGGAAGCATGGGGTTTCTTTTGTCCTGTACACACTCCTGATGGTGCACCTTGTGGTCTTTTAAATCACTT]

[+] EMBL CD119862             [CCGATGTTTCAAGAAGTTTTATTACCGTCTACTTTATATCTCCAAGTATTACGTGCGAAAGTACTTCATTTACTTGCAAATGTCAAAGAACAGGTTTTATTAAAAAGTCGGAAACAGAACGTTCGTATATCCCTGTCCTTATTTCATCAGGCTCTCTTATCTCGCGCTTCTGAAGTCAGTACAGCAATGGTGTATATGGTGTCTACTGGGAATCTTCCTCCCTCATGTAAATCTACTCTTTCCGCTCAGCTTAGCGGGCAATCAACTGGCTTAAGTGTTCCGGCGGATAATGTTAATTTTCTTCGATTCGCTGCACAATTTCGAGCTGTTCACCGAGGGGCATTTTTCACAGAAATGCGAACTACTTCAGTTCGTCGTTTACTGCCGGAAGCATGGGGTTTCTTTTGTCCTGTACACACTCCTGATGGTGCACCTTGTGGTCTTTTAAATCACTT]




>consensus_2946#0
CCGATGTTTCAAGAAGTTTTATTACCGTCTACTTTATATCTCCAAGTATTACGTGCGAAA
GTACTTCATTTACTTGCAAATGTCAAAGAACAGGTTTTATTAAAAAGTCGGAAACAGAAC
GTTCGTATATCCCTGTCCTTATTTCATCAGGCTCTCTTATCTCGCGCTTCTGAAGTCAGT
ACAGCAATGGTGTATATGGTGTCTACTGGGAATCTTCCTCCCTCATGTAAATCTACTCTT
TCCGCTCAGCTTAGCGGGCAATCAACTGGCTTAAGTGTTCCGGCGGATAATGTTAATTTT
CTTCGATTCGCTGCACAATTTCGAGCTGTTCACCGAGGGGCATTTTTCACAGAAATGCGA
ACTACTTCAGTTCGTCGTTTACTGCCGGAAGCATGGGGTTTCTTTTGTCCTGTACACACT
CCTGATGGTGCACCTTGTGGTCTTTTAAATCACTT

consensusID : consensus_2946#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence

                              [CATCTGTCATCATTCTTGGATAAGTATCATTTGCTCTGTTTCATGATTAAAAAGTTGCATGCATTTGTCTCTGGATTATGTTGTGAAGAAAGCAATGACAATCCGATATTTCAAGAAGTTTTATTACCGTCTACTTTATATCTCCAAGTATTACGTGCGAAAGTACTTCATTTACTTGCAAATGTCAAAGAACAGGTTTTATTAAAAAGTCGGAAACAGAACGTTCGTATATCCCTGTGTAAGTCATGTCTTATTGGCATAATTACAAATGTGCACCATTTATGTGCTAATAATTAAAACTGCTGAAAACCTACATATTTCATTGTCTATGGCACCATATTTATTAATCTTGTAGCATTTATCGTCGATTACATCATTGCTATTGTTTGGTAAGTGATTTAAAAATAGTAGGTTGATTAGTTTATATTTGACTAAAGT]

[+] EMBL CD098393             [CATCTGTCATCATTCTTGGATAAGTATCATTTGCTCTGTTTCATGATTAAAAAGTTGCATGCATTTGTCTCTGGATTATGTTGTGAAGAAAGCAATGACAATCCGATATTTCAAGAAGTTTTATTACCGTCTACTTTATATCTCCAAGTATTACGTGCGAAAGTACTTCATTTACTTGCAAATGTCAAAGAACAGGTTTTATTAAAAAGTCGGAAACAGAACGTTCGTATATCCCTGTGTAAGTCATGTCTTATTGGCATAATTACAAATGTGCACCATTTATGTGCTAATAATTAAAACTGCTGAAAACCTACATATTTCATTGTCTATGGCACCATATTTATTAATCTTGTAGCATTTATCGTCGATTACATCATTGCTATTGTTTGGTAAGTGATTTAAAAATAGTAGGTTGATTAGTTTATATTTGACTAAAGT]




>consensus_2946#1
CATCTGTCATCATTCTTGGATAAGTATCATTTGCTCTGTTTCATGATTAAAAAGTTGCAT
GCATTTGTCTCTGGATTATGTTGTGAAGAAAGCAATGACAATCCGATATTTCAAGAAGTT
TTATTACCGTCTACTTTATATCTCCAAGTATTACGTGCGAAAGTACTTCATTTACTTGCA
AATGTCAAAGAACAGGTTTTATTAAAAAGTCGGAAACAGAACGTTCGTATATCCCTGTGT
AAGTCATGTCTTATTGGCATAATTACAAATGTGCACCATTTATGTGCTAATAATTAAAAC
TGCTGAAAACCTACATATTTCATTGTCTATGGCACCATATTTATTAATCTTGTAGCATTT
ATCGTCGATTACATCATTGCTATTGTTTGGTAAGTGATTTAAAAATAGTAGGTTGATTAG
TTTATATTTGACTAAAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2946#0      ------------------------------------------------------------
consensus_2946#1      CATCTGTCATCATTCTTGGATAAGTATCATTTGCTCTGTTTCATGATTAAAAAGTTGCAT 60
                                                                                  

consensus_2946#0      ------------------------------------------CCGATGTTTCAAGAAGTT 18
consensus_2946#1      GCATTTGTCTCTGGATTATGTTGTGAAGAAAGCAATGACAATCCGATATTTCAAGAAGTT 120
                                                                ***** ************

consensus_2946#0      TTATTACCGTCTACTTTATATCTCCAAGTATTACGTGCGAAAGTACTTCATTTACTTGCA 78
consensus_2946#1      TTATTACCGTCTACTTTATATCTCCAAGTATTACGTGCGAAAGTACTTCATTTACTTGCA 180
                      ************************************************************

consensus_2946#0      AATGTCAAAGAACAGGTTTTATTAAAAAGTCGGAAACAGAACGTTCGTATATCCCTGTCC 138
consensus_2946#1      AATGTCAAAGAACAGGTTTTATTAAAAAGTCGGAAACAGAACGTTCGTATATCCCTGTG- 239
                      **********************************************************  

consensus_2946#0      TTATTTCATCAGGCTCTCTTATCTCGCGCTTCTGAAGTCAGTACAGCAATGGTGTATATG 198
consensus_2946#1      -TAAGTCATG------TCTTAT-TGGCATAATTACAAAT-GTGCACCA----TTTATGTG 286
                       **  ****       ****** * **     *  *    ** ** **    * *** **

consensus_2946#0      GTGTCTACTGGGAATCTTCCTCCCTCATGTAAATCTACTCTTTCCGCTCAGCTTAGCGGG 258
consensus_2946#1      CTAATAATTAAAACTGCTGAAAACCTACATAT-TTCATTGTCTATGG-CACCATATTTAT 344
                       *    * *   * *  *     *  *  **  *  * * * *  *  ** * **     

consensus_2946#0      CAATCAACTGGCTTAAGTGTTCCGGCGGATAAT-GTTAATTTTCTTCGATTCGCTGCACA 317
consensus_2946#1      TAATCTTGTAGCATTTATCGTCGATTACATCATTGCTATTGTTTGGTAAGTGATTTAAAA 404
                       ****   * ** *   *  **      ** ** * ** * **     * *   *  * *

consensus_2946#0      ATTTCGAGCTGTTCACCGAGGGGCATTTTTCACAGAAATGCGAACTACTTCAGTTCGTCG 377
consensus_2946#1      ATAGTAGGTTGATTA-----GTTTATATTTGACTAAAGT--------------------- 438
                      **     * ** * *     *   ** *** **  ** *                     

consensus_2946#0      TTTACTGCCGGAAGCATGGGGTTTCTTTTGTCCTGTACACACTCCTGATGGTGCACCTTG 437
consensus_2946#1      ------------------------------------------------------------
                                                                                  

consensus_2946#0      TGGTCTTTTAAATCACTT 455
consensus_2946#1      ------------------