These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2949#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [AGCTCACCATCAGAGATTGTTAATTCTGAATCATTTTCTGCTTCAAAATCAAATAGCGCTTTACAAGATGGTCCTAAAATAGGTGCATTTTTTGTTGTATGAGAACCTGGACCATTTTAGTTGGAGTATTTAAAGTACTATTTAATGGACTTCTACTCCCTGATATATCATGATTTAATGTATCATTTACACGTTTTATTTCATATAATTTATGTGGTTTTGACATTGATTCTTCTTTTTTATCAATTAAAAATTTCCTCAATTGTTCCATAATCTCTGCAGCTTGACGATGATAATCAGCTTGTGATGTTGTAAATTCTAATAACGATTGCACTTGATCAGTTTCACTATTCAAAAAATTAATCATTGCTTGTTCGGCTAATGCTTTTGATTCTTGAAATTTTTCTTCAGCAACTTTAAGTTCGTCTTCAGGCAATCTTGAATTGTTTGCACTTCGATCCTGCTTTCGTTTCTTACGATCAAAGTCTAATCTTCGTCCTTCGAGTTTCTTACG] [+] EMBL CD128850 [AGCTCACCATCAGAGATTGTTAATTCTGAATCATTTTCTGCTTCAAAATCAAATAGCGCTTTACAAGATGGTCCTAAAATAGGTGCATTTTTTGTTGTATGAGAACCTGGACCATTTTAGTTGGAGTATTTAAAGTACTATTTAATGGACTTCTACTCCCTGATATATCATGATTTAATGTATCATTTACACGTTTTATTTCATATAATTTATGTGGTTTTGACATTGATTCTTCTTTTTTATCAATTAAAAATTTCCTCAATTGTTCCATAATCTCTGCAGCTTGACGATGATAATCAGCTTGTGATGTTGTAAATTCTAATAACGATTGCACTTGATCAGTTTCACTATTCAAAAAATTAATCATTGCTTGTTCGGCTAATGCTTTTGATTCTTGAAATTTTTCTTCAGCAACTTTAAGTTCGTCTTCAGGCAATCTTGAATTGTTTGCACTTCGATCCTGCTTTCGTTTCTTACGATCAAAGTCTAATCTTCGTCCTTCGAGTTTCTTACG] consensusID : consensus_2949#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 415 fasta sequence [TGTTGTATGAGAACCTGGACCATTTTTAGTTGGAGTATTTAAAGTACTATTTAATGGACTTCTACTCCCTGATATATCATGATTTAATGTATCATTTACACGTTTTATTTCATATAATTTATGTGGTTTTGACATTGATTCTTCTTTTCTATGGAGATAATAATAATGATAAGGATAGAGGAAATTTATTACAATTGGGTGCAAAATAACTTTTTATACTACAGCAAATAGAAATTGAACTCCCACTTCATCAGGTTAGATTTTAAATGAAAGTAAACTAAGGAGTTATTGTACAATTGGACATGAAAGAAAATAATCAGTCAGCCAATAAGCAACGTAGAGCTTAGCATCAGTCATACAATAACAACAGAACGAGATTAAATTAGAAAGACAGATATCAGAGTAGTACCAGTAG] [+] EMBL CD098401 [TGTTGTATGAGAACCTGGACCATTTTTAGTTGGAGTATTTAAAGTACTATTTAATGGACTTCTACTCCCTGATATATCATGATTTAATGTATCATTTACACGTTTTATTTCATATAATTTATGTGGTTTTGACATTGATTCTTCTTTTCTATGGAGATAATAATAATGATAAGGATAGAGGAAATTTATTACAATTGGGTGCAAAATAACTTTTTATACTACAGCAAATAGAAATTGAACTCCCACTTCATCAGGTTAGATTTTAAATGAAAGTAAACTAAGGAGTTATTGTACAATTGGACATGAAAGAAAATAATCAGTCAGCCAATAAGCAACGTAGAGCTTAGCATCAGTCATACAATAACAACAGAACGAGATTAAATTAGAAAGACAGATATCAGAGTAGTACCAGTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2949#0 AGCTCACCATCAGAGATTGTTAATTCTGAATCATTTTCTGCTTCAAAATCAAATAGCGCT 60 consensus_2949#1 ------------------------------------------------------------ consensus_2949#0 TTACAAGATGGTCCTAAAATAGGTGCATTTTTTGTTGTATGAGAACCTGGACCATTTT-A 119 consensus_2949#1 --------------------------------TGTTGTATGAGAACCTGGACCATTTTTA 28 ************************** * consensus_2949#0 GTTGGAGTATTTAAAGTACTATTTAATGGACTTCTACTCCCTGATATATCATGATTTAAT 179 consensus_2949#1 GTTGGAGTATTTAAAGTACTATTTAATGGACTTCTACTCCCTGATATATCATGATTTAAT 88 ************************************************************ consensus_2949#0 GTATCATTTACACGTTTTATTTCATATAATTTATGTGGTTTTGACATTGATTCTTCTTTT 239 consensus_2949#1 GTATCATTTACACGTTTTATTTCATATAATTTATGTGGTTTTGACATTGATTCTTCTTTT 148 ************************************************************ consensus_2949#0 TTATCAAT-TAAAAATTTCCTCAATTGTTCCATAATCTC--TGCAGCTTGACGATGATAA 296 consensus_2949#1 CTATGGAGATAATAATAATGATAAGGATAGAGGAAATTTATTACAATTGGGTGCAAAATA 208 *** * *** *** ** * ** * * ** * * * * * consensus_2949#0 TCAGCTTGTGATGTTGTAAATTCTAATAACGATTGCACTTGATCAGTTTCACTATTCAA- 355 consensus_2949#1 ACTTTTTATACTACAGCAAATAGAAATTGAACTCCCACTTCATCAGGTTAGATTTTAAAT 268 * ** * * * **** *** * ***** ***** ** * ** ** consensus_2949#0 -AAAATTAATCATTGC-TTGTTCGGCTAATGCTTTTGATTCTTGAAATTTTTCTTCAGCA 413 consensus_2949#1 GAAAGTAAACTAAGGAGTTATTGTACAATTGGACATGAAA--GAAAATAATCAGTCAGCC 326 *** * ** * * ** ** * * ** *** **** * ***** consensus_2949#0 ACTT--TAAGTTCGTCTTCAGG--CAATCTTGAATTGTTTGCACTTCGATCCTGCTTTCG 469 consensus_2949#1 AATAAGCAACGTAGAGCTTAGCATCAGTCATACAATAACAACAGAACGAGATTAAATTAG 386 * * ** * * * ** ** ** * * * ** *** * ** * consensus_2949#0 TTTCTTACGATCAAAGTCTAATCTTCGTCCTTCGAGTTTCTTACG 514 consensus_2949#1 AAAGACA-GATATCAGAGTAGTACCAGTAG--------------- 415 * *** ** ** * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||