cluster # 2954

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Schistosoma mansoni
cluster # 2954 cluster # 2954 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2954#0 length = 380 sequences # 1

consensus_2954#1 length = 277 sequences # 1

consensusID : consensus_2954#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [AAGAGAACGAAGACCCAGAAAAACTTGAAGTGACAGTTAATGATGGTCTATGGAAACTGAATACATTTTGTTTCTGAAAATGATCAGACCTGGGACTTTGATGAGGTGAACTGTAAGGGATTGTATTGCGAGGGGAATACACTGCGGGACTATTCGTTAATGACATATCATCAGGTGTGGAAAACATAGCTCGATGTTGTCGTTCACTCAACTGACGAATAAGAGGTTTCTCAAGGGATCTACGATGTGCTGGAAAAAACATAATATTGTTTTGAGAGATTGAGTTAGAGCTTATAGGGTGTGTAGAGGTTTGACCTAGAGAAATACCAATCGTTGAGCAGATCCTTTAGAAACATGTACTGGCTGACAATACAATTTCT]

[+] EMBL CD132538             [AAGAGAACGAAGACCCAGAAAAACTTGAAGTGACAGTTAATGATGGTCTATGGAAACTGAATACATTTTGTTTCTGAAAATGATCAGACCTGGGACTTTGATGAGGTGAACTGTAAGGGATTGTATTGCGAGGGGAATACACTGCGGGACTATTCGTTAATGACATATCATCAGGTGTGGAAAACATAGCTCGATGTTGTCGTTCACTCAACTGACGAATAAGAGGTTTCTCAAGGGATCTACGATGTGCTGGAAAAAACATAATATTGTTTTGAGAGATTGAGTTAGAGCTTATAGGGTGTGTAGAGGTTTGACCTAGAGAAATACCAATCGTTGAGCAGATCCTTTAGAAACATGTACTGGCTGACAATACAATTTCT]




>consensus_2954#0
AAGAGAACGAAGACCCAGAAAAACTTGAAGTGACAGTTAATGATGGTCTATGGAAACTGA
ATACATTTTGTTTCTGAAAATGATCAGACCTGGGACTTTGATGAGGTGAACTGTAAGGGA
TTGTATTGCGAGGGGAATACACTGCGGGACTATTCGTTAATGACATATCATCAGGTGTGG
AAAACATAGCTCGATGTTGTCGTTCACTCAACTGACGAATAAGAGGTTTCTCAAGGGATC
TACGATGTGCTGGAAAAAACATAATATTGTTTTGAGAGATTGAGTTAGAGCTTATAGGGT
GTGTAGAGGTTTGACCTAGAGAAATACCAATCGTTGAGCAGATCCTTTAGAAACATGTAC
TGGCTGACAATACAATTTCT

consensusID : consensus_2954#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence

                              [GTTCACTCAACTGACGAATAAGAGGTTTCTCAAGGGATCTACGATGTGCTGGAAAAAACATAATATTGTTTTGAGAGATTGAGTTAGAGCTTATAGGGTGTGTAGAGGTTTGACCTAGAGAAATACCAAATCGTTGAGCAGCAACAGAAGCATAGGTTTGAGCAGATCTTTAGAACATGTTACTGGCTGACAATAACAATTCTTCGATTTATCCATATATGCATTGTTCGGTATTGAATCTGACTGATGAATACAACAAATTTAATTGGTATCTGGT]

[+] EMBL CD110784             [GTTCACTCAACTGACGAATAAGAGGTTTCTCAAGGGATCTACGATGTGCTGGAAAAAACATAATATTGTTTTGAGAGATTGAGTTAGAGCTTATAGGGTGTGTAGAGGTTTGACCTAGAGAAATACCAAATCGTTGAGCAGCAACAGAAGCATAGGTTTGAGCAGATCTTTAGAACATGTTACTGGCTGACAATAACAATTCTTCGATTTATCCATATATGCATTGTTCGGTATTGAATCTGACTGATGAATACAACAAATTTAATTGGTATCTGGT]




>consensus_2954#1
GTTCACTCAACTGACGAATAAGAGGTTTCTCAAGGGATCTACGATGTGCTGGAAAAAACA
TAATATTGTTTTGAGAGATTGAGTTAGAGCTTATAGGGTGTGTAGAGGTTTGACCTAGAG
AAATACCAAATCGTTGAGCAGCAACAGAAGCATAGGTTTGAGCAGATCTTTAGAACATGT
TACTGGCTGACAATAACAATTCTTCGATTTATCCATATATGCATTGTTCGGTATTGAATC
TGACTGATGAATACAACAAATTTAATTGGTATCTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2954#0      AAGAGAACGAAGACCCAGAAAAACTTGAAGTGACAGTTAATGATGGTCTATGGAAACTGA 60
consensus_2954#1      ------------------------------------------------------------
                                                                                  

consensus_2954#0      ATACATTTTGTTTCTGAAAATGATCAGACCTGGGACTTTGATGAGGTGAACTGTAAGGGA 120
consensus_2954#1      ------------------------------------------------------------
                                                                                  

consensus_2954#0      TTGTATTGCGAGGGGAATACACTGCGGGACTATTCGTTAATGACATATCATCAGGTGTGG 180
consensus_2954#1      ------------------------------------------------------------
                                                                                  

consensus_2954#0      AAAACATAGCTCGATGTTGTCGTTCACTCAACTGACGAATAAGAGGTTTCTCAAGGGATC 240
consensus_2954#1      ---------------------GTTCACTCAACTGACGAATAAGAGGTTTCTCAAGGGATC 39
                                           ***************************************

consensus_2954#0      TACGATGTGCTGGAAAAAACATAATATTGTTTTGAGAGATTGAGTTAGAGCTTATAGGGT 300
consensus_2954#1      TACGATGTGCTGGAAAAAACATAATATTGTTTTGAGAGATTGAGTTAGAGCTTATAGGGT 99
                      ************************************************************

consensus_2954#0      GTGTAGAGGTTTGACCTAGAGAAATACCAA-TCGTTGAGCAG------------------ 341
consensus_2954#1      GTGTAGAGGTTTGACCTAGAGAAATACCAAATCGTTGAGCAGCAACAGAAGCATAGGTTT 159
                      ****************************** ***********                  

consensus_2954#0      ----ATCCTTTAGAAACATGT-ACTGGCTGACAATA-CAATTTCT--------------- 380
consensus_2954#1      GAGCAGATCTTTAGAACATGTTACTGGCTGACAATAACAATTCTTCGATTTATCCATATA 219
                          *    **   ******* ************** *****  *               

consensus_2954#0      ----------------------------------------------------------
consensus_2954#1      TGCATTGTTCGGTATTGAATCTGACTGATGAATACAACAAATTTAATTGGTATCTGGT 277