These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_297#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence [GTATACACACACTCATCATTGTCCATACTCAAAGTTGGATCTGGTAGTGTTCATCATATTGCACCAATCACTCTCTATCACTCAGTCAAACACACAAATAAACACAACAACAAATAACACATATCCTTCACTTACCATTATTCATTGTCCTCCTTCACTCTACAACTGTACAATACTTCCCTCAGTCATTCCTTCCTCCAGTGTTTTATTCACTGCTTCGTGTCTGATCTCTCAGTCGTCACCGTCTATCGCTCCATTCCACAACAA] [+] EMBL CD059766 [GTATACACACACTCATCATTGTCCATACTCAAAGTTGGATCTGGTAGTGTTCATCATATTGCACCAATCACTCTCTATCACTCAGTCAAACACACAAATAAACACAACAACAAATAACACATATCCTTCACTTACCATTATTCATTGTCCTCCTTCACTCTACAACTGTACAATACTTCCCTCAGTCATTCCTTCCTCCAGTGTTTTATTCACTGCTTCGTGTCTGATCTCTCAGTCGTCACCGTCTATCGCTCCATTCCACAACAA] consensusID : consensus_297#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 212 fasta sequence [GTACATCGCCTCCATTATTCATGTCTCCTTCACTCTACAACTGTACAATACTTCCCTCAGTCATTCCTTCCTCCAGTGTTTTATAAACTGCTTCGTGTCTGATCTCTCAGTCGTCACCGTCTATCGCTCCATTCCACAACAAGTTCAGTTCCTGCGAAAACAGTGCCCAATCATCAATTGACGTAAATGTTTGTTGATCTTTTATTCTCGCT] [+] EMBL CD166519 [GTACATCGCCTCCATTATTCATGTCTCCTTCACTCTACAACTGTACAATACTTCCCTCAGTCATTCCTTCCTCCAGTGTTTTATAAACTGCTTCGTGTCTGATCTCTCAGTCGTCACCGTCTATCGCTCCATTCCACAACAAGTTCAGTTCCTGCGAAAACAGTGCCCAATCATCAATTGACGTAAATGTTTGTTGATCTTTTATTCTCGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_297#0 GTATACACACACTCATCATTGTCCATACTCAAAGTTGGATCTGGTAGTGTTCATCATATT 60 consensus_297#1 ------------------------------------------------------------ consensus_297#0 GCACCAATCACTCTCTATCACTCAGTCAAACACACAAATAAACACAACAACAAATAACAC 120 consensus_297#1 ------------------------------------------------------------ consensus_297#0 ATATCCTTCACTTACCATTATTCATTGTCCTCCTTCACTCTACAACTGTACAATACTTCC 180 consensus_297#1 --GTACATCGCCT-CCATTATTCAT--GTCTCCTTCACTCTACAACTGTACAATACTTCC 55 * * ** * * *********** ******************************* consensus_297#0 CTCAGTCATTCCTTCCTCCAGTGTTTTATTCACTGCTTCGTGTCTGATCTCTCAGTCGTC 240 consensus_297#1 CTCAGTCATTCCTTCCTCCAGTGTTTTATAAACTGCTTCGTGTCTGATCTCTCAGTCGTC 115 ***************************** ***************************** consensus_297#0 ACCGTCTATCGCTCCATTCCACAACAA--------------------------------- 267 consensus_297#1 ACCGTCTATCGCTCCATTCCACAACAAGTTCAGTTCCTGCGAAAACAGTGCCCAATCATC 175 *************************** consensus_297#0 ------------------------------------- consensus_297#1 AATTGACGTAAATGTTTGTTGATCTTTTATTCTCGCT 212 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||