These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2974#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [CACAGAAAAAAAAGAAATTATAGAGGCAAAGAAAAAAGAAATAGGAGAAAAATCGTGATTTTTTTTTACTTGGACAACACAAGATCGATAACAATGAAGAAAAATATTTTTGAGATGAGAAACACAAACAAAAACAAACAAACAAAACAACGGTAGATCAGTAGAACAGTAAATAAACATTAAAAAAAACCAAGGGATAAATGCAGAGTAAGTAAGATAGACACACAAACAAATAAACATATGAATACGATGAGGTATACACACACCATCACGTAAGAGTGTACGTATATAAACACACAAACGCAAGAGAAATGGAAGGGGGGGAAATAAGGAAAGACTAGAAGAAATTCA] [+] EMBL CD111110 [CACAGAAAAAAAAGAAATTATAGAGGCAAAGAAAAAAGAAATAGGAGAAAAATCGTGATTTTTTTTTACTTGGACAACACAAGATCGATAACAATGAAGAAAAATATTTTTGAGATGAGAAACACAAACAAAAACAAACAAACAAAACAACGGTAGATCAGTAGAACAGTAAATAAACATTAAAAAAAACCAAGGGATAAATGCAGAGTAAGTAAGATAGACACACAAACAAATAAACATATGAATACGATGAGGTATACACACACCATCACGTAAGAGTGTACGTATATAAACACACAAACGCAAGAGAAATGGAAGGGGGGGAAATAAGGAAAGACTAGAAGAAATTCA] consensusID : consensus_2974#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 204 fasta sequence [TATAAACATTTAANATNAAACCGAGGGGATNAATNCAGAGTAAGTAAGATAGACACGNCAANCNNGATAAACATATGAATACGNTGAGGTATACACACACCATCACGTNAGAGTGTACGTATATAAACACNCANACGCGAGAGAAATGGAAGGGGGGGGGAAATAAGGANAGACTAGNAGAAATTCATCACACATCNTCAANAC] [-] EMBL SMRAP124 [TATAAACATTTAANATNAAACCGAGGGGATNAATNCAGAGTAAGTAAGATAGACACGNCAANCNNGATAAACATATGAATACGNTGAGGTATACACACACCATCACGTNAGAGTGTACGTATATAAACACNCANACGCGAGAGAAATGGAAGGGGGGGGGAAATAAGGANAGACTAGNAGAAATTCATCACACATCNTCAANAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2974#0 CACAGAAAAAAAAGAAATTATAGAGGCAAAGAAAAAAGAAATAGGAGAAAAATCGTGATT 60 consensus_2974#1 ------------------------------------------------------------ consensus_2974#0 TTTTTTTACTTGGACAACACAAGATCGATAACAATGAAGAAAAATATTTTTGAGATGAGA 120 consensus_2974#1 ------------------------------------------------------------ consensus_2974#0 AACACAAACAAAAACAAACAAACAAAACAACGGTAGATCAGTAGAACAGTAAATAAACAT 180 consensus_2974#1 ---------------------------------------------------TATAAACAT 9 ******** consensus_2974#0 TAAAAA--AAACCAAGGG-ATAAATGCAGAGTAAGTAAGATAGACAC-ACAAACAA-ATA 235 consensus_2974#1 TTAANATNAAACCGAGGGGATNAATNCAGAGTAAGTAAGATAGACACGNCAANCNNGATA 69 * ** * ***** **** ** *** ********************* *** * *** consensus_2974#0 AACATATGAATACGATGAGGTATACACACACCATCACGTAAGAGTGTACGTATATAAACA 295 consensus_2974#1 AACATATGAATACGNTGAGGTATACACACACCATCACGTNAGAGTGTACGTATATAAACA 129 ************** ************************ ******************** consensus_2974#0 CACAAACGCAAGAGAAATGGAAGGGGGGG--AAATAAGGAAAGACTAGAAGAAATTCA-- 351 consensus_2974#1 CNCANACGCGAGAGAAATGGAAGGGGGGGGGAAATAAGGANAGACTAGNAGAAATTCATC 189 * ** **** ******************* ********* ******* ********* consensus_2974#0 --------------- consensus_2974#1 ACACATCNTCAANAC 204 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||