These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3005#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [TACAATCGCCAGAAGTTCTGCTTTCACAAATATTCAGTAAAGTTAATGGATTCACATATGATTCCAAGTCATCATTTGTGGAATCATCTTCATCATCATCAACATCATCAAAGTTAAATTCACCTTACGGACGTAGAAGTCTTTCACATTGTAAATTGATCTAATTTTTCTCACTGCACTGAAATTTTCCCGCTATAAAAATTTTTACGGTATCATAGGGTTATACAAGAAGTTTTCTCGTCGAAATGCTATTTCGCCAACTAGAAATATGCTCGTTTACTTCAATTGAACAAGTAAATTGTGTTTAGGATGGAGCATCTATTTAAAAASTAAAGTCATTGATCAGTTTGTAATCTATTGTGATACAGATAATGTGTTCATCTACACTCTGTTTCGATATGTAACGTATTTTGGAACAGATGGATTGGAAATTGAATATAAAGTATATCTATCTAGTTCTTAGCTACTTCTGCTAATAGTT] [+] EMBL SM1247301 [TACAATCGCCAGAAGTTCTGCTTTCACAAATATTCAGTAAAGTTAATGGATTCACATATGATTCCAAGTCATCATTTGTGGAATCATCTTCATCATCATCAACATCATCAAAGTTAAATTCACCTTACGGACGTAGAAGTCTTTCACATTGTAAATTGATCTAATTTTTCTCACTGCACTGAAATTTTCCCGCTATAAAAATTTTTACGGTATCATAGGGTTATACAAGAAGTTTTCTCGTCGAAATGCTATTTCGCCAACTAGAAATATGCTCGTTTACTTCAATTGAACAAGTAAATTGTGTTTAGGATGGAGCATCTATTTAAAAASTAAAGTCATTGATCAGTTTGTAATCTATTGTGATACAGATAATGTGTTCATCTACACTCTGTTTCGATATGTAACGTATTTTGGAACAGATGGATTGGAAATTGAATATAAAGTATATCTATCTAGTTCTTAGCTACTTCTGCTAATAGTT] consensusID : consensus_3005#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence [CAGTGTGAATATATTCATAGTCATGTAGAAAACAAATCTATATACACCACAAAACTATAAATTTACAATTCAAATATCATTCCCGTTGGTCAAGTGGTTATGCAGTTTGGATAATTCGTCATCCTGGTCATGGTTTACAATCGCCAGAAGTTCTGCTTTCACAAATATTCAGTAAAGTTAATGGATTCACATATGATTCCAAGTCATCATTTGTGGAAGAATGCAGCAGCAAGTATGCCCTAATCAGTTGTACATGTTCGATCCTGGTTCAAAGTTTCTCCTCCAGTCGGTTAGTCGGCCTACATTGTCCGGTAGCCTAAAGTTAAATCATACTATCAATGCTAAAAAGTTTCATCCCCCCTGTTGGGCTGAAGTAAGAGGTACGGGTGGTAGTGTACCGAGTGCTAGAGATGGTCA] [+] EMBL CD111706 [CAGTGTGAATATATTCATAGTCATGTAGAAAACAAATCTATATACACCACAAAACTATAAATTTACAATTCAAATATCATTCCCGTTGGTCAAGTGGTTATGCAGTTTGGATAATTCGTCATCCTGGTCATGGTTTACAATCGCCAGAAGTTCTGCTTTCACAAATATTCAGTAAAGTTAATGGATTCACATATGATTCCAAGTCATCATTTGTGGAAGAATGCAGCAGCAAGTATGCCCTAATCAGTTGTACATGTTCGATCCTGGTTCAAAGTTTCTCCTCCAGTCGGTTAGTCGGCCTACATTGTCCGGTAGCCTAAAGTTAAATCATACTATCAATGCTAAAAAGTTTCATCCCCCCTGTTGGGCTGAAGTAAGAGGTACGGGTGGTAGTGTACCGAGTGCTAGAGATGGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3005#0 TACAATCGCCAGAAGTTCTGCTTTCACAAATATTCAGTAAAGTTAATGGATTCACATATG 60 consensus_3005#1 ---------CAGTGTGAATATATTCATAGTCATGTAGAA-----AACAAATCTATATACA 46 *** * **** * ** ** * ** ** * *** consensus_3005#0 ATTCCAAGTCATCATTTGTGGAATCATCTTCATCATCATCAACATCATCAAAGTTAAATT 120 consensus_3005#1 CCACAAAACTATAAATTTACAATTCA-----AATATCATTCCCGTTGGTCAAGTGG---- 97 * ** ** * ** * *** * ***** * * **** consensus_3005#0 CACCTTACGGACGTAGAAGTCTTTCACATTGTAAATTGATCTAATTTTTCTCACTGCACT 180 consensus_3005#1 ----TTATGCAGTTTGGATAATTCGTCATC-----CTGGTC--ATGGTTTACAATCGCCA 146 *** * * * * * ** *** ** ** ** ** ** * * consensus_3005#0 GAAATTTTCCCGCTATAAAAATTTTTACGGTATCATAGGGTTATACAAGAAGTTTTCTCG 240 consensus_3005#1 GAAGTTCTGCTTTCACAAATATTCAGTAAAGTTAATGGATTCACATATGA---TTCCAAG 203 *** ** * * * *** *** * ** * * * * * ** ** * * consensus_3005#0 TCGAAATGCTATTTCGCCAACTAGAAATATGCTCGTTTACTTCAATTGAACAAGT--AAA 298 consensus_3005#1 TCATCAT-TTGTGGAAGAATGCAGCAGCAAGTATGCCCTAATCAGTTGTACATGTTCGAT 262 ** ** * * * ** * * * * *** *** *** ** * consensus_3005#0 TTGTGTTTAGGATGGAGCATCTATTTAAAAASTAAAGTCATTGATCAGTTTGTAATCTAT 358 consensus_3005#1 CCTGGTTCAAAGTTTCTCCTCCAGTCGGTTAGTCGGCCTAC--ATTGTCCGGTAGCCTAA 320 *** * * * ** * * * * * ** *** *** consensus_3005#0 TGTGATACAGATAATGTGTTCATCTACACTCTGTTTCGATATGTAACGTATTTTGGAACA 418 consensus_3005#1 AGT----TAAATCATACTATCAATGCTAAAAAGTTTCATCCCCCCTGTTGGGCTGAAGTA 376 ** * ** ** *** * ***** * ** * * consensus_3005#0 GATGG-ATTGGAAATTGAATATAAAGTATATCTATCTAGTTCTTAGCTACTTCTGCTAAT 477 consensus_3005#1 AGAGGTACGGGTGGTAGTGTACCGAGTGC-TAGAGATGGTCA------------------ 417 ** * ** * * ** *** * * * ** consensus_3005#0 AGTT 481 consensus_3005#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||