cluster # 3008

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Schistosoma mansoni
cluster # 3008 cluster # 3008 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3008#0 length = 556 sequences # 1

consensus_3008#1 length = 229 sequences # 1

consensusID : consensus_3008#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence

                              [TTCTAAGGATCGGAGTGGTATATACATAAATGAGTATGGCAGATTTTATTCGGTAACCCAACAAACTTTCTCGCCCACTCTTGTGTTTTCGCTCAAGTAGTCAGTTGGAAGGTTATTGTGTAGCACACCGTGTATCAATATCAAACTTTGGACACCCCCTGTCATGACAGGGACCCAAAGAAACAGGTCTTCCAGTTACCGTAGCTCGATTAGTCATCACAATATGCAAGCCTGACCATCATGTCGGAATAGCGGCTATGGTCAGGATCGTTTACATGATGTCTGGGCATAACATTAGATAAGTTAACCATCGTTATTTAGCACGTTTGATTTACAGATAAGTAGTTACCTTTCGTTTTGAATATTTCATCTCGGTAGGTAGGCGAATTCTTAGGATTTTGATCAAAAATTCAGTTGAATGAATTTATCTCATATTTCTTTTCTATATATATTCATTTTACATAGAAATATACTATCGAGTGAGATATGAATGATCCGGTCGATGCAGAAATCAAACGTTATTTTGATACTTTGCATGGTTGTGTATAGCCGGAAT]

[+] EMBL CD068490             [TTCTAAGGATCGGAGTGGTATATACATAAATGAGTATGGCAGATTTTATTCGGTAACCCAACAAACTTTCTCGCCCACTCTTGTGTTTTCGCTCAAGTAGTCAGTTGGAAGGTTATTGTGTAGCACACCGTGTATCAATATCAAACTTTGGACACCCCCTGTCATGACAGGGACCCAAAGAAACAGGTCTTCCAGTTACCGTAGCTCGATTAGTCATCACAATATGCAAGCCTGACCATCATGTCGGAATAGCGGCTATGGTCAGGATCGTTTACATGATGTCTGGGCATAACATTAGATAAGTTAACCATCGTTATTTAGCACGTTTGATTTACAGATAAGTAGTTACCTTTCGTTTTGAATATTTCATCTCGGTAGGTAGGCGAATTCTTAGGATTTTGATCAAAAATTCAGTTGAATGAATTTATCTCATATTTCTTTTCTATATATATTCATTTTACATAGAAATATACTATCGAGTGAGATATGAATGATCCGGTCGATGCAGAAATCAAACGTTATTTTGATACTTTGCATGGTTGTGTATAGCCGGAAT]




>consensus_3008#0
TTCTAAGGATCGGAGTGGTATATACATAAATGAGTATGGCAGATTTTATTCGGTAACCCA
ACAAACTTTCTCGCCCACTCTTGTGTTTTCGCTCAAGTAGTCAGTTGGAAGGTTATTGTG
TAGCACACCGTGTATCAATATCAAACTTTGGACACCCCCTGTCATGACAGGGACCCAAAG
AAACAGGTCTTCCAGTTACCGTAGCTCGATTAGTCATCACAATATGCAAGCCTGACCATC
ATGTCGGAATAGCGGCTATGGTCAGGATCGTTTACATGATGTCTGGGCATAACATTAGAT
AAGTTAACCATCGTTATTTAGCACGTTTGATTTACAGATAAGTAGTTACCTTTCGTTTTG
AATATTTCATCTCGGTAGGTAGGCGAATTCTTAGGATTTTGATCAAAAATTCAGTTGAAT
GAATTTATCTCATATTTCTTTTCTATATATATTCATTTTACATAGAAATATACTATCGAG
TGAGATATGAATGATCCGGTCGATGCAGAAATCAAACGTTATTTTGATACTTTGCATGGT
TGTGTATAGCCGGAAT

consensusID : consensus_3008#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 229
fasta sequence

                              [ATATGCAAGCCTGGCCATCATGTTGGAATAGCGGCTATGGTCAGGATCGTTTACATGATGTCTGGGCATAACATTGAGATAAAGTTAACCATCGTTATTTAGCACGTTTGGAATTACAGGTTAAGTGGTTACCTTTATTTTTCCAGCCTTCATGTAAACGTCCCCGTACCATAGCCGCTATTCCAACATGATGGTCAAGGCTTCCATATGTBAAGCCTTAAAAGGCCGG]

[+] EMBL SMRAP0194            [ATATGCAAGCCTGGCCATCATGTTGGAATAGCGGCTATGGTCAGGATCGTTTACATGATGTCTGGGCATAACATTGAGATAAAGTTAACCATCGTTATTTAGCACGTTTGGAATTACAGGTTAAGTGGTTACCTTTATTTTTCCAGCCTTCATGTAAACGTCCCCGTACCATAGCCGCTATTCCAACATGATGGTCAAGGCTTCCATATGTBAAGCCTTAAAAGGCCGG]




>consensus_3008#1
ATATGCAAGCCTGGCCATCATGTTGGAATAGCGGCTATGGTCAGGATCGTTTACATGATG
TCTGGGCATAACATTGAGATAAAGTTAACCATCGTTATTTAGCACGTTTGGAATTACAGG
TTAAGTGGTTACCTTTATTTTTCCAGCCTTCATGTAAACGTCCCCGTACCATAGCCGCTA
TTCCAACATGATGGTCAAGGCTTCCATATGTBAAGCCTTAAAAGGCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3008#0      TTCTAAGGATCGGAGTGGTATATACATAAATGAGTATGGCAGATTTTATTCGGTAACCCA 60
consensus_3008#1      ------------------------------------------------------------
                                                                                  

consensus_3008#0      ACAAACTTTCTCGCCCACTCTTGTGTTTTCGCTCAAGTAGTCAGTTGGAAGGTTATTGTG 120
consensus_3008#1      ------------------------------------------------------------
                                                                                  

consensus_3008#0      TAGCACACCGTGTATCAATATCAAACTTTGGACACCCCCTGTCATGACAGGGACCCAAAG 180
consensus_3008#1      ------------------------------------------------------------
                                                                                  

consensus_3008#0      AAACAGGTCTTCCAGTTACCGTAGCTCGATTAGTCATCACAATATGCAAGCCTGACCATC 240
consensus_3008#1      -----------------------------------------ATATGCAAGCCTGGCCATC 19
                                                               ************* *****

consensus_3008#0      ATGTCGGAATAGCGGCTATGGTCAGGATCGTTTACATGATGTCTGGGCATAACATT-AGA 299
consensus_3008#1      ATGTTGGAATAGCGGCTATGGTCAGGATCGTTTACATGATGTCTGGGCATAACATTGAGA 79
                      **** *************************************************** ***

consensus_3008#0      TAA-GTTAACCATCGTTATTTAGCACGTTTG-ATTTACAGAT-AAGTAGTTACCTTTCGT 356
consensus_3008#1      TAAAGTTAACCATCGTTATTTAGCACGTTTGGAATTACAGGTTAAGTGGTTACCTTTATT 139
                      *** *************************** * ****** * **** *********  *

consensus_3008#0      TTTGAATATTTCATCTCGGTAGGTAGGCGAATTCTTAGGATTTTGATCAAAAATTCAGTT 416
consensus_3008#1      TTTCCAGCCTTCAT----GTAAACGTCCCCGTACCATAGCCGCTATTCCAACATGATGGT 195
                      ***  *   *****    ***      *   * *    *    *  ** ** **   * *

consensus_3008#0      GAATGAATTTATCTCATATTTCTTTTCTATATATATTCATTTTACATAGAAATATACTAT 476
consensus_3008#1      CAAGGC-----TTCCATATGTBAAGCCTTAAAAGGCCGG--------------------- 229
                       ** *      *  ***** *     **  * *                           

consensus_3008#0      CGAGTGAGATATGAATGATCCGGTCGATGCAGAAATCAAACGTTATTTTGATACTTTGCA 536
consensus_3008#1      ------------------------------------------------------------
                                                                                  

consensus_3008#0      TGGTTGTGTATAGCCGGAAT 556
consensus_3008#1      --------------------