These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3008#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [TTCTAAGGATCGGAGTGGTATATACATAAATGAGTATGGCAGATTTTATTCGGTAACCCAACAAACTTTCTCGCCCACTCTTGTGTTTTCGCTCAAGTAGTCAGTTGGAAGGTTATTGTGTAGCACACCGTGTATCAATATCAAACTTTGGACACCCCCTGTCATGACAGGGACCCAAAGAAACAGGTCTTCCAGTTACCGTAGCTCGATTAGTCATCACAATATGCAAGCCTGACCATCATGTCGGAATAGCGGCTATGGTCAGGATCGTTTACATGATGTCTGGGCATAACATTAGATAAGTTAACCATCGTTATTTAGCACGTTTGATTTACAGATAAGTAGTTACCTTTCGTTTTGAATATTTCATCTCGGTAGGTAGGCGAATTCTTAGGATTTTGATCAAAAATTCAGTTGAATGAATTTATCTCATATTTCTTTTCTATATATATTCATTTTACATAGAAATATACTATCGAGTGAGATATGAATGATCCGGTCGATGCAGAAATCAAACGTTATTTTGATACTTTGCATGGTTGTGTATAGCCGGAAT] [+] EMBL CD068490 [TTCTAAGGATCGGAGTGGTATATACATAAATGAGTATGGCAGATTTTATTCGGTAACCCAACAAACTTTCTCGCCCACTCTTGTGTTTTCGCTCAAGTAGTCAGTTGGAAGGTTATTGTGTAGCACACCGTGTATCAATATCAAACTTTGGACACCCCCTGTCATGACAGGGACCCAAAGAAACAGGTCTTCCAGTTACCGTAGCTCGATTAGTCATCACAATATGCAAGCCTGACCATCATGTCGGAATAGCGGCTATGGTCAGGATCGTTTACATGATGTCTGGGCATAACATTAGATAAGTTAACCATCGTTATTTAGCACGTTTGATTTACAGATAAGTAGTTACCTTTCGTTTTGAATATTTCATCTCGGTAGGTAGGCGAATTCTTAGGATTTTGATCAAAAATTCAGTTGAATGAATTTATCTCATATTTCTTTTCTATATATATTCATTTTACATAGAAATATACTATCGAGTGAGATATGAATGATCCGGTCGATGCAGAAATCAAACGTTATTTTGATACTTTGCATGGTTGTGTATAGCCGGAAT] consensusID : consensus_3008#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence [ATATGCAAGCCTGGCCATCATGTTGGAATAGCGGCTATGGTCAGGATCGTTTACATGATGTCTGGGCATAACATTGAGATAAAGTTAACCATCGTTATTTAGCACGTTTGGAATTACAGGTTAAGTGGTTACCTTTATTTTTCCAGCCTTCATGTAAACGTCCCCGTACCATAGCCGCTATTCCAACATGATGGTCAAGGCTTCCATATGTBAAGCCTTAAAAGGCCGG] [+] EMBL SMRAP0194 [ATATGCAAGCCTGGCCATCATGTTGGAATAGCGGCTATGGTCAGGATCGTTTACATGATGTCTGGGCATAACATTGAGATAAAGTTAACCATCGTTATTTAGCACGTTTGGAATTACAGGTTAAGTGGTTACCTTTATTTTTCCAGCCTTCATGTAAACGTCCCCGTACCATAGCCGCTATTCCAACATGATGGTCAAGGCTTCCATATGTBAAGCCTTAAAAGGCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3008#0 TTCTAAGGATCGGAGTGGTATATACATAAATGAGTATGGCAGATTTTATTCGGTAACCCA 60 consensus_3008#1 ------------------------------------------------------------ consensus_3008#0 ACAAACTTTCTCGCCCACTCTTGTGTTTTCGCTCAAGTAGTCAGTTGGAAGGTTATTGTG 120 consensus_3008#1 ------------------------------------------------------------ consensus_3008#0 TAGCACACCGTGTATCAATATCAAACTTTGGACACCCCCTGTCATGACAGGGACCCAAAG 180 consensus_3008#1 ------------------------------------------------------------ consensus_3008#0 AAACAGGTCTTCCAGTTACCGTAGCTCGATTAGTCATCACAATATGCAAGCCTGACCATC 240 consensus_3008#1 -----------------------------------------ATATGCAAGCCTGGCCATC 19 ************* ***** consensus_3008#0 ATGTCGGAATAGCGGCTATGGTCAGGATCGTTTACATGATGTCTGGGCATAACATT-AGA 299 consensus_3008#1 ATGTTGGAATAGCGGCTATGGTCAGGATCGTTTACATGATGTCTGGGCATAACATTGAGA 79 **** *************************************************** *** consensus_3008#0 TAA-GTTAACCATCGTTATTTAGCACGTTTG-ATTTACAGAT-AAGTAGTTACCTTTCGT 356 consensus_3008#1 TAAAGTTAACCATCGTTATTTAGCACGTTTGGAATTACAGGTTAAGTGGTTACCTTTATT 139 *** *************************** * ****** * **** ********* * consensus_3008#0 TTTGAATATTTCATCTCGGTAGGTAGGCGAATTCTTAGGATTTTGATCAAAAATTCAGTT 416 consensus_3008#1 TTTCCAGCCTTCAT----GTAAACGTCCCCGTACCATAGCCGCTATTCCAACATGATGGT 195 *** * ***** *** * * * * * ** ** ** * * consensus_3008#0 GAATGAATTTATCTCATATTTCTTTTCTATATATATTCATTTTACATAGAAATATACTAT 476 consensus_3008#1 CAAGGC-----TTCCATATGTBAAGCCTTAAAAGGCCGG--------------------- 229 ** * * ***** * ** * * consensus_3008#0 CGAGTGAGATATGAATGATCCGGTCGATGCAGAAATCAAACGTTATTTTGATACTTTGCA 536 consensus_3008#1 ------------------------------------------------------------ consensus_3008#0 TGGTTGTGTATAGCCGGAAT 556 consensus_3008#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||