These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3021#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [GAAGTAAACACTGTGTTCTGTGAAGGATCATACAGTAGGAGTGAAAAAGGCTAGAGCTTCTATTTAGGATCCTATGTGATTCTAGAGACACGACGATCGCTTTCTCGCCTGGTCTATGCTACCTTACACTGAGATGGACTAGGAGAACAAGACACTTATAACACAGATCCAGCTAACAAAGTGATAATTTAAAGCAAACATCACACAGCAGAAAACAAAGAAAAATAGAAAGTGCAGCAAAAGAGCTGGGGATAAACATAGCAAGATAGCAGAGAATGCATCCAAATGAAACATAATAGGCTTCGTCTTTATCATCAAACATTTTGTCATCATATAAGTATAATTCATTTGAGGAATCTCAGTGTTGTGCAAAAATGTAGAATATTATAATCAACTTAGGAATTATCGTAATAAAACCCCTAGGAAAAATTACAATTAACTTGAGTCAATTAGATTTCTCAAGGATCCTTGACTCTAGCTCTGGCTAACAGGATTCCTAATGAGACAATTAATATT] [+] EMBL CD068558 [GAAGTAAACACTGTGTTCTGTGAAGGATCATACAGTAGGAGTGAAAAAGGCTAGAGCTTCTATTTAGGATCCTATGTGATTCTAGAGACACGACGATCGCTTTCTCGCCTGGTCTATGCTACCTTACACTGAGATGGACTAGGAGAACAAGACACTTATAACACAGATCCAGCTAACAAAGTGATAATTTAAAGCAAACATCACACAGCAGAAAACAAAGAAAAATAGAAAGTGCAGCAAAAGAGCTGGGGATAAACATAGCAAGATAGCAGAGAATGCATCCAAATGAAACATAATAGGCTTCGTCTTTATCATCAAACATTTTGTCATCATATAAGTATAATTCATTTGAGGAATCTCAGTGTTGTGCAAAAATGTAGAATATTATAATCAACTTAGGAATTATCGTAATAAAACCCCTAGGAAAAATTACAATTAACTTGAGTCAATTAGATTTCTCAAGGATCCTTGACTCTAGCTCTGGCTAACAGGATTCCTAATGAGACAATTAATATT] consensusID : consensus_3021#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence [CAGAAGTTACTACAATGTGTTTTTCAAAGATCATACAGTAAGTGAAAAAGCTAGAGCTTCTATTTAGGACCTTGTGATTCTAGAACACACATCCTTTCTGCCTGGCTATGCTACCTTTCACTGAGATGGACTAGGAGAACAAGACACTTATAACACAGATCCAGCTAACAAAGTGAT] [+] EMBL CD068555 [CAGAAGTTACTACAATGTGTTTTTCAAAGATCATACAGTAAGTGAAAAAGCTAGAGCTTCTATTTAGGACCTTGTGATTCTAGAACACACATCCTTTCTGCCTGGCTATGCTACCTTTCACTGAGATGGACTAGGAGAACAAGACACTTATAACACAGATCCAGCTAACAAAGTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3021#0 --GAAGTAAACACTGTGT-TCTGTGAAGGATCATACAGTAGGAGTGAAAAAGGCTAGAGC 57 consensus_3021#1 CAGAAGTTACTACAATGTGTTTTTCAAAGATCATACAGTA--AGTGAAAAAG-CTAGAGC 57 ***** * ** *** * * * ** ************ ********** ******* consensus_3021#0 TTCTATTTAGGATCCTATGTGATTCTAGAGACACGACGATCGCTTTCTCGCCTGGTCTAT 117 consensus_3021#1 TTCTATTTAGGACCT--TGTGATTCTAGA-ACAC----ACATCCTTTCTGCCTGG-CTAT 109 ************ * ************ **** * * ** ****** **** consensus_3021#0 GCTACCTTACACTGAGATGGACTAGGAGAACAAGACACTTATAACACAGATCCAGCTAAC 177 consensus_3021#1 GCTACCTTTCACTGAGATGGACTAGGAGAACAAGACACTTATAACACAGATCCAGCTAAC 169 ******** *************************************************** consensus_3021#0 AAAGTGATAATTTAAAGCAAACATCACACAGCAGAAAACAAAGAAAAATAGAAAGTGCAG 237 consensus_3021#1 AAAGTGAT---------------------------------------------------- 177 ******** consensus_3021#0 CAAAAGAGCTGGGGATAAACATAGCAAGATAGCAGAGAATGCATCCAAATGAAACATAAT 297 consensus_3021#1 ------------------------------------------------------------ consensus_3021#0 AGGCTTCGTCTTTATCATCAAACATTTTGTCATCATATAAGTATAATTCATTTGAGGAAT 357 consensus_3021#1 ------------------------------------------------------------ consensus_3021#0 CTCAGTGTTGTGCAAAAATGTAGAATATTATAATCAACTTAGGAATTATCGTAATAAAAC 417 consensus_3021#1 ------------------------------------------------------------ consensus_3021#0 CCCTAGGAAAAATTACAATTAACTTGAGTCAATTAGATTTCTCAAGGATCCTTGACTCTA 477 consensus_3021#1 ------------------------------------------------------------ consensus_3021#0 GCTCTGGCTAACAGGATTCCTAATGAGACAATTAATATT 516 consensus_3021#1 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||