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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_306#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence
[GCCAANAATGCGGCACGAGGGCCTTTCTGCAATATGCACAAAGCTTTCCATTCTTCTATGGGAACATTAGGTAGAAGGGATATTCATCATGCCAATATATGAGATGTTTTTCTGACGTAATATGTGCGATTGCCTGTCTGGAAGTTTTTCGAGTACGAGTTCTAGAATTGGGGTTATTTCTAGAGTACTGGGAGGTCTCCAATGTAGATCGACATCATGGATACTAGGAGTTCTGTTAGAGAGATTATGAACCACCTTTAGACTCAGTAGAAGTAGTTGTTTTTTTTTGGGGGAATCCTTCCAAATTTCGTGTGCTGATTTCCGTGTGGAACGCTTATGCANACTATGTTAGCCACTGCTTCTATGAAGNTGTGCGACGGCAATATCTTCAGGTGGAAAACAATGGCGTGATGGTTTNANATTTGCGCTACGTGTCTGCAACAAAACAGAAGACGTTTATTAGAAGAGTTATTGTTGCCTCATTGCAGTTCGTTGATTATCCGAAACGTTAAAGAATTCGGGGATTTTAATCGAATTCCCCGAATTCCGATTTTAAGACCCTTTTGGAAAAATTACAAACCTTCTGAAAGCGGGATTTGGGGGGTTCCATGGGTGTAATACCCAAACCCCCCCTTAAAATTCACCCGAAACCCTTTAGGGGGGGTTTTGGAAA]
[+] EMBL CD080739 [GCCAANAATGCGGCACGAGGGCCTTTCTGCAATATGCACAAAGCTTTCCATTCTTCTATGGGAACATTAGGTAGAAGGGATATTCATCATGCCAATATATGAGATGTTTTTCTGACGTAATATGTGCGATTGCCTGTCTGGAAGTTTTTCGAGTACGAGTTCTAGAATTGGGGTTATTTCTAGAGTACTGGGAGGTCTCCAATGTAGATCGACATCATGGATACTAGGAGTTCTGTTAGAGAGATTATGAACCACCTTTAGACTCAGTAGAAGTAGTTGTTTTTTTTTGGGGGAATCCTTCCAAATTTCGTGTGCTGATTTCCGTGTGGAACGCTTATGCANACTATGTTAGCCACTGCTTCTATGAAGNTGTGCGACGGCAATATCTTCAGGTGGAAAACAATGGCGTGATGGTTTNANATTTGCGCTACGTGTCTGCAACAAAACAGAAGACGTTTATTAGAAGAGTTATTGTTGCCTCATTGCAGTTCGTTGATTATCCGAAACGTTAAAGAATTCGGGGATTTTAATCGAATTCCCCGAATTCCGATTTTAAGACCCTTTTGGAAAAATTACAAACCTTCTGAAAGCGGGATTTGGGGGGTTCCATGGGTGTAATACCCAAACCCCCCCTTAAAATTCACCCGAAACCCTTTAGGGGGGGTTTTGGAAA]
consensusID : consensus_306#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence
[TAATATGTGCGATTGCCTGTCTGGAAGTTTTTCGAGTACGAGTTCTAGAATTGGGGTTATTTCTAGAGTACTGGGAGGTCTCCAATGTAGATCGACATCATGGATACTAGGAGTTCTGTTAGAGAGATTATGAACCACCTTTAGATCAGTAGAAGTAGTTGTTGTATTTTTGGTGAATCCTTCCAAATTTCGTGTGCTGATTTCCGTGTGGAACGCTTATGCAAACTATGTTAGCCACTGCTTCTATGAAGTTGTGCGACGGCAAATATCTTCAGGTGGAAAACAATGGCGTGATGGTATTACATTTGCGCTACGTGTCTGCAAACAAAACAGAAAGACGTTTATATAGAGAGAGTTATTGGTTGTCTTCATTGCAGTTCGTTTGATTATCCGCAAAACGTTAGAAGAATTCGGGGTATTTTCAGTCGCATTTCCCCGAAATACACGATATTAAAGATCCCTATTGGGAAAAATATACAAACCTCTCCTGAAAGTCGGGATATTTGGTTGGTTTACCATGTGTGTTAATAGTCTCAAGCACATCCCTTTAAATTTTCATACCATGATCACTATTTATTGTGTTGTTTATTGATAAACTA]
[-] EMBL CD074662 [TAATATGTGCGATTGCCTGTCTGGAAGTTTTTCGAGTACGAGTTCTAGAATTGGGGTTATTTCTAGAGTACTGGGAGGTCTCCAATGTAGATCGACATCATGGATACTAGGAGTTCTGTTAGAGAGATTATGAACCACCTTTAGATCAGTAGAAGTAGTTGTTGTATTTTTGGTGAATCCTTCCAAATTTCGTGTGCTGATTTCCGTGTGGAACGCTTATGCAAACTATGTTAGCCACTGCTTCTATGAAGTTGTGCGACGGCAAATATCTTCAGGTGGAAAACAATGGCGTGATGGTATTACATTTGCGCTACGTGTCTGCAAACAAAACAGAAAGACGTTTATATAGAGAGAGTTATTGGTTGTCTTCATTGCAGTTCGTTTGATTATCCGCAAAACGTTAGAAGAATTCGGGGTATTTTCAGTCGCATTTCCCCGAAATACACGATATTAAAGATCCCTATTGGGAAAAATATACAAACCTCTCCTGAAAGTCGGGATATTTGGTTGGTTTACCATGTGTGTTAATAGTCTCAAGCACATCCCTTTAAATTTTCATACCATGATCACTATTTATTGTGTTGTTTATTGATAAACTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_306#0 GCCAANAATGCGGCACGAGGGCCTTTCTGCAATATGCACAAAGCTTTCCATTCTTCTATG 60
consensus_306#1 ------------------------------------------------------------
consensus_306#0 GGAACATTAGGTAGAAGGGATATTCATCATGCCAATATATGAGATGTTTTTCTGACGTAA 120
consensus_306#1 ---------------------------------------------------------TAA 3
***
consensus_306#0 TATGTGCGATTGCCTGTCTGGAAGTTTTTCGAGTACGAGTTCTAGAATTGGGGTTATTTC 180
consensus_306#1 TATGTGCGATTGCCTGTCTGGAAGTTTTTCGAGTACGAGTTCTAGAATTGGGGTTATTTC 63
************************************************************
consensus_306#0 TAGAGTACTGGGAGGTCTCCAATGTAGATCGACATCATGGATACTAGGAGTTCTGTTAGA 240
consensus_306#1 TAGAGTACTGGGAGGTCTCCAATGTAGATCGACATCATGGATACTAGGAGTTCTGTTAGA 123
************************************************************
consensus_306#0 GAGATTATGAACCACCTTTAGACTCAGTAGAAGTAGTTGTTTTTTTTTGGGGGAATCCTT 300
consensus_306#1 GAGATTATGAACCACCTTTAGA-TCAGTAGAAGTAGTTGTTGTATTTTTGGTGAATCCTT 182
********************** ****************** * **** ** ********
consensus_306#0 CCAAATTTCGTGTGCTGATTTCCGTGTGGAACGCTTATGCANACTATGTTAGCCACTGCT 360
consensus_306#1 CCAAATTTCGTGTGCTGATTTCCGTGTGGAACGCTTATGCAAACTATGTTAGCCACTGCT 242
***************************************** ******************
consensus_306#0 TCTATGAAGNTGTGCGACGGCAA-TATCTTCAGGTGGAAAACAATGGCGTGATGGTTTNA 419
consensus_306#1 TCTATGAAGTTGTGCGACGGCAAATATCTTCAGGTGGAAAACAATGGCGTGATGGTATTA 302
********* ************* ******************************** * *
consensus_306#0 NATTTGCGCTACGTGTCTGCAA-CAAAACAGAA-GACGTTTAT-TAGA-AGAGTTATTG- 474
consensus_306#1 CATTTGCGCTACGTGTCTGCAAACAAAACAGAAAGACGTTTATATAGAGAGAGTTATTGG 362
********************* ********** ********* **** **********
consensus_306#0 TTGCCT-CATTGCAGTTCGTT-GATTATCCG--AAACGTTA-AAGAATTCGGGGA--TTT 527
consensus_306#1 TTGTCTTCATTGCAGTTCGTTTGATTATCCGCAAAACGTTAGAAGAATTCGGGGTATTTT 422
*** ** ************** ********* ******** ************ ***
consensus_306#0 TAATCGAATT-CCCCGAATTCC--GATTTTAAGA--CCCTTTTGGAAAAATTA--CAAAC 580
consensus_306#1 CAGTCGCATTTCCCCGAAATACACGATATTAAAGATCCCTATTGGGAAAAATATACAAAC 482
* *** *** ******* * * *** **** **** **** **** ** *****
consensus_306#0 CTT--CTGAAAGCGGG---ATTTGGGGGGTT--CCATGGGTGT-AATA--CCCAAACCC- 629
consensus_306#1 CTCTCCTGAAAGTCGGGATATTTGGTTGGTTTACCATGTGTGTTAATAGTCTCAAGCACA 542
** ******* ** ****** **** ***** **** **** * *** * *
consensus_306#0 CCCCTTAAAATTC----ACCCGAA--ACCCTTTAGGGGGGGTTTTGGAAA------- 673
consensus_306#1 TCCCTTTAAATTTTCATACCATGATCACTATTTATTGTGTTGTTTATTGATAAACTA 599
***** ***** *** * ** **** * * *** *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||