cluster # 3088

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Schistosoma mansoni
cluster # 3088 cluster # 3088 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3088#0 length = 384 sequences # 1

consensus_3088#1 length = 309 sequences # 1

consensusID : consensus_3088#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence

                              [ATAAATGCATTCCGTATTCGTTGCATACTAACAAGCACTTGAGCAAATGGTGTCACAATCACACCTTCAACAGATGAATCTGGTAAGACTGCAGTTATTCCATTTGTACTTGATGAACTGGTACTAGTTGCAGCAGTTGCTCCGCCTGTACTAGATCGACCCAATCTAACAATCATCGATCCTCTACGTATAGGAATTTTTTTATTCATTAATTGTGATTCAAATGAATTATTTGTAATCGAATTTAAACCATTTCCAGTTGACGTATTTGGATCAGTTGATGTACGTGGTAAAAAAAATGTAGGAGAATTATGATGATTACAATAGGAATAAGCACGATTATTCGTTGTGAAATGTATATTGGTAATAGATCGCCTAAATAGC]

[+] EMBL CD069033             [ATAAATGCATTCCGTATTCGTTGCATACTAACAAGCACTTGAGCAAATGGTGTCACAATCACACCTTCAACAGATGAATCTGGTAAGACTGCAGTTATTCCATTTGTACTTGATGAACTGGTACTAGTTGCAGCAGTTGCTCCGCCTGTACTAGATCGACCCAATCTAACAATCATCGATCCTCTACGTATAGGAATTTTTTTATTCATTAATTGTGATTCAAATGAATTATTTGTAATCGAATTTAAACCATTTCCAGTTGACGTATTTGGATCAGTTGATGTACGTGGTAAAAAAAATGTAGGAGAATTATGATGATTACAATAGGAATAAGCACGATTATTCGTTGTGAAATGTATATTGGTAATAGATCGCCTAAATAGC]




>consensus_3088#0
ATAAATGCATTCCGTATTCGTTGCATACTAACAAGCACTTGAGCAAATGGTGTCACAATC
ACACCTTCAACAGATGAATCTGGTAAGACTGCAGTTATTCCATTTGTACTTGATGAACTG
GTACTAGTTGCAGCAGTTGCTCCGCCTGTACTAGATCGACCCAATCTAACAATCATCGAT
CCTCTACGTATAGGAATTTTTTTATTCATTAATTGTGATTCAAATGAATTATTTGTAATC
GAATTTAAACCATTTCCAGTTGACGTATTTGGATCAGTTGATGTACGTGGTAAAAAAAAT
GTAGGAGAATTATGATGATTACAATAGGAATAAGCACGATTATTCGTTGTGAAATGTATA
TTGGTAATAGATCGCCTAAATAGC

consensusID : consensus_3088#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 309
fasta sequence

                              [AAATCAAACAAATATATGTCTGGAATCAAATAAAAGCAACTGGAAATATATGATACATTGAATCAATGGAGTTACGAACCGATAAAGTGATTTCATCAAACGATACGATATCTTCGAGTCAAGAACCTCAGTTATCTCCACAAATTCCTGCAGTTGTTAAACCACGGCGTGGATCTATATTTGTTTCAGCACTTGCAGCGGAACAACATGGAGCATCATCTTTATCAACAGATAATACAGGATCGATGATTGTTAGATTGGGTCGATCTAGTACAGGCGGAGCAACTGCTGCAACTAGTACCAGTTCAT]

[+] EMBL CD196124             [AAATCAAACAAATATATGTCTGGAATCAAATAAAAGCAACTGGAAATATATGATACATTGAATCAATGGAGTTACGAACCGATAAAGTGATTTCATCAAACGATACGATATCTTCGAGTCAAGAACCTCAGTTATCTCCACAAATTCCTGCAGTTGTTAAACCACGGCGTGGATCTATATTTGTTTCAGCACTTGCAGCGGAACAACATGGAGCATCATCTTTATCAACAGATAATACAGGATCGATGATTGTTAGATTGGGTCGATCTAGTACAGGCGGAGCAACTGCTGCAACTAGTACCAGTTCAT]




>consensus_3088#1
AAATCAAACAAATATATGTCTGGAATCAAATAAAAGCAACTGGAAATATATGATACATTG
AATCAATGGAGTTACGAACCGATAAAGTGATTTCATCAAACGATACGATATCTTCGAGTC
AAGAACCTCAGTTATCTCCACAAATTCCTGCAGTTGTTAAACCACGGCGTGGATCTATAT
TTGTTTCAGCACTTGCAGCGGAACAACATGGAGCATCATCTTTATCAACAGATAATACAG
GATCGATGATTGTTAGATTGGGTCGATCTAGTACAGGCGGAGCAACTGCTGCAACTAGTA
CCAGTTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3088#0      ATAAATGCATTCCGTATTCGTTGCATACTAACAAGCACTTGAGCAAATGGTGTCACAATC 60
consensus_3088#1      --AAATCAAACAAATATATGTCTGGAATCAA-----ATAAAAGCAACTGGAAATATA-TG 52
                        ****  *     ***  **     *  **     *    ***** ***    * * * 

consensus_3088#0      ACACCTTCAACAGATGAATCTGGTAAG-ACTGCAGTTATTCCATTTGTACTTGATGAACT 119
consensus_3088#1      ATACATTGAATCAATGGAGTTACGAACCGATAAAGTGATTTCATC-----------AAAC 101
                      * ** ** **   *** *  *   **    *  *** *** ***            **  

consensus_3088#0      GGTACTAGTTGCAGCAGTTGCTCCGCCTGTACTAGATCGACCCAATCTAACAATCATCGA 179
consensus_3088#1      GATACGATATCTTCGAGTCAAGA-ACCTCAGTTATCTCCACAAATTCCTGCAGTTGTTAA 160
                      * *** *  *     ***       ***    **  ** **  * **   ** *  *  *

consensus_3088#0      TCCTCTACGTATAGGAATTTTTTTATTCATTAATTGTGATTCAAATGAATTATTTGTAAT 239
consensus_3088#1      ACCACGGCGTGGATCTATATTTGT-TTCAGCACTTG-----CAGCGGAACAACATGGAGC 214
                       ** *  ***  *   ** *** * ****  * ***     **   ***  *  ** *  

consensus_3088#0      CGAATTTAAACCATTTCCAGTTGACGTATTTGGATCAGTTGATGTACGTGGTAAAAAAAA 299
consensus_3088#1      ATCATCTTTATCA---ACAGATAATACAGGATCGATGATTGTTAGATTGGGTCGATCTAG 271
                         ** *  * **    *** * *   *          *** *  *   ***  *   * 

consensus_3088#0      TGTAGGAGAATTATGATGATTACAATAGGAATAAGCACGATTATTCGTTGTGAAATGTAT 359
consensus_3088#1      TACAGGCGGAGCA--ACTGCTGCAACTAGTACCAGTTCAT-------------------- 309
                      *  *** * *  *  *    * ***   * *  **  *                      

consensus_3088#0      ATTGGTAATAGATCGCCTAAATAGC 384
consensus_3088#1      -------------------------