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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3095 cluster # 3095       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3095#0 length = 585 sequences # 1  
consensus_3095#1 length = 447 sequences # 1  

consensusID : consensus_3095#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence
                              [ATACACCAAGGTATTCCGTATCTAGAGATGACAGTAGTTGTAGTCCTTTCGGTCCGGTTCAAGATGTAACACAAAAGGTGTTCTGTTCAACTGAACCATTTGCTACGGATACAACTTTTCAAGTTCGAAGTGTTTATCCATTCCTTGATCTTCGAGTGTTGGTCTTTGAATCAAATTATTATCGATACGGAGTTCAACTGTGTAATTCTAATGGCCCTGTAATTAGTTTAAATATGCCATCTGAAGCATGTCGTCGTCAATTCATCGACTGGGCGTACGGATCCATTGCTGAAATGGAGGAATTACAACAACATCAACAAGTTAAGAAAAGTGAATGTGAACGAACTATTATTGTTAATTGTAAACGGAGCCCAACGAAGACTACTGCTAATGGTACTATTTCTATTATTAATGGCGATAGATGTGTCATGCCTTCCTCAAGAGTAACCGAAAAAGTTATCTTATTTAATACCTAATTATTATTATTATTCTCATTATTACTAACCAGCATCATTGGTGAAACTGCAGATAAACAGAATATTATTGATTTACATTTTTTTTTGTATTTGAGTTCACAGAATATTT]

[+] EMBL CD114146             [ATACACCAAGGTATTCCGTATCTAGAGATGACAGTAGTTGTAGTCCTTTCGGTCCGGTTCAAGATGTAACACAAAAGGTGTTCTGTTCAACTGAACCATTTGCTACGGATACAACTTTTCAAGTTCGAAGTGTTTATCCATTCCTTGATCTTCGAGTGTTGGTCTTTGAATCAAATTATTATCGATACGGAGTTCAACTGTGTAATTCTAATGGCCCTGTAATTAGTTTAAATATGCCATCTGAAGCATGTCGTCGTCAATTCATCGACTGGGCGTACGGATCCATTGCTGAAATGGAGGAATTACAACAACATCAACAAGTTAAGAAAAGTGAATGTGAACGAACTATTATTGTTAATTGTAAACGGAGCCCAACGAAGACTACTGCTAATGGTACTATTTCTATTATTAATGGCGATAGATGTGTCATGCCTTCCTCAAGAGTAACCGAAAAAGTTATCTTATTTAATACCTAATTATTATTATTATTCTCATTATTACTAACCAGCATCATTGGTGAAACTGCAGATAAACAGAATATTATTGATTTACATTTTTTTTTGTATTTGAGTTCACAGAATATTT]


>consensus_3095#0 ATACACCAAGGTATTCCGTATCTAGAGATGACAGTAGTTGTAGTCCTTTCGGTCCGGTTC AAGATGTAACACAAAAGGTGTTCTGTTCAACTGAACCATTTGCTACGGATACAACTTTTC AAGTTCGAAGTGTTTATCCATTCCTTGATCTTCGAGTGTTGGTCTTTGAATCAAATTATT ATCGATACGGAGTTCAACTGTGTAATTCTAATGGCCCTGTAATTAGTTTAAATATGCCAT CTGAAGCATGTCGTCGTCAATTCATCGACTGGGCGTACGGATCCATTGCTGAAATGGAGG AATTACAACAACATCAACAAGTTAAGAAAAGTGAATGTGAACGAACTATTATTGTTAATT GTAAACGGAGCCCAACGAAGACTACTGCTAATGGTACTATTTCTATTATTAATGGCGATA GATGTGTCATGCCTTCCTCAAGAGTAACCGAAAAAGTTATCTTATTTAATACCTAATTAT TATTATTATTCTCATTATTACTAACCAGCATCATTGGTGAAACTGCAGATAAACAGAATA TTATTGATTTACATTTTTTTTTGTATTTGAGTTCACAGAATATTT



consensusID : consensus_3095#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence
                              [TTCGGGCAAGGAAAACTATTATTGTTAATTGTAAACGGAGCCCAACGAAGACTACTGCTAATGGTACTATTTCTATTATTAATGGCGATAGATGTGTCATGCCTTCCTCAAGAGTAACTGAAAAAGTTATCTTATTTAATACCTAATTATTATTATTATTCTCATTATTACTAACCAGCATCATTGGTGAAACTGCAGATAAACAGAATATTATTGATTTACATTTTTTTTTGTATTGAGTTCACAGAATATTTCAGTTGAATTCCTTTTTTCACTTTGTAATTTCTATTCCATGGTACAAGAGTAAACAGTAGTCTATACATAAAGATGATTCTTTTCATTGTTTCAATGGGTATTTTTTGTATTGATTGCCCATTCCACCTCAGACATTCAGGTGATATATGCTTGGAATCTCTCTACTCTCCCCGTTTCTGTGATACTTTAATT]

[+] EMBL AW062230             [TTCGGGCAAGGAAAACTATTATTGTTAATTGTAAACGGAGCCCAACGAAGACTACTGCTAATGGTACTATTTCTATTATTAATGGCGATAGATGTGTCATGCCTTCCTCAAGAGTAACTGAAAAAGTTATCTTATTTAATACCTAATTATTATTATTATTCTCATTATTACTAACCAGCATCATTGGTGAAACTGCAGATAAACAGAATATTATTGATTTACATTTTTTTTTGTATTGAGTTCACAGAATATTTCAGTTGAATTCCTTTTTTCACTTTGTAATTTCTATTCCATGGTACAAGAGTAAACAGTAGTCTATACATAAAGATGATTCTTTTCATTGTTTCAATGGGTATTTTTTGTATTGATTGCCCATTCCACCTCAGACATTCAGGTGATATATGCTTGGAATCTCTCTACTCTCCCCGTTTCTGTGATACTTTAATT]


>consensus_3095#1 TTCGGGCAAGGAAAACTATTATTGTTAATTGTAAACGGAGCCCAACGAAGACTACTGCTA ATGGTACTATTTCTATTATTAATGGCGATAGATGTGTCATGCCTTCCTCAAGAGTAACTG AAAAAGTTATCTTATTTAATACCTAATTATTATTATTATTCTCATTATTACTAACCAGCA TCATTGGTGAAACTGCAGATAAACAGAATATTATTGATTTACATTTTTTTTTGTATTGAG TTCACAGAATATTTCAGTTGAATTCCTTTTTTCACTTTGTAATTTCTATTCCATGGTACA AGAGTAAACAGTAGTCTATACATAAAGATGATTCTTTTCATTGTTTCAATGGGTATTTTT TGTATTGATTGCCCATTCCACCTCAGACATTCAGGTGATATATGCTTGGAATCTCTCTAC TCTCCCCGTTTCTGTGATACTTTAATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3095#0      ATACACCAAGGTATTCCGTATCTAGAGATGACAGTAGTTGTAGTCCTTTCGGTCCGGTTC 60
consensus_3095#1      ------------------------------------------------------------
                                                                                  

consensus_3095#0      AAGATGTAACACAAAAGGTGTTCTGTTCAACTGAACCATTTGCTACGGATACAACTTTTC 120
consensus_3095#1      ------------------------------------------------------------
                                                                                  

consensus_3095#0      AAGTTCGAAGTGTTTATCCATTCCTTGATCTTCGAGTGTTGGTCTTTGAATCAAATTATT 180
consensus_3095#1      ------------------------------------------------------------
                                                                                  

consensus_3095#0      ATCGATACGGAGTTCAACTGTGTAATTCTAATGGCCCTGTAATTAGTTTAAATATGCCAT 240
consensus_3095#1      ------------------------------------------------------------
                                                                                  

consensus_3095#0      CTGAAGCATGTCGTCGTCAATTCATCGACTGGGCGTACGGATCCATTGCTGAAATGGAGG 300
consensus_3095#1      ------------------------------------------------------------
                                                                                  

consensus_3095#0      AATTACAACAACATCAACAAGTTAAGAAAAGTGAATGTGAACGAACTATTATTGTTAATT 360
consensus_3095#1      -----------------------------TTCGGGCAAGGA-AAACTATTATTGTTAATT 30
                                                      *     * *  *****************

consensus_3095#0      GTAAACGGAGCCCAACGAAGACTACTGCTAATGGTACTATTTCTATTATTAATGGCGATA 420
consensus_3095#1      GTAAACGGAGCCCAACGAAGACTACTGCTAATGGTACTATTTCTATTATTAATGGCGATA 90
                      ************************************************************

consensus_3095#0      GATGTGTCATGCCTTCCTCAAGAGTAACCGAAAAAGTTATCTTATTTAATACCTAATTAT 480
consensus_3095#1      GATGTGTCATGCCTTCCTCAAGAGTAACTGAAAAAGTTATCTTATTTAATACCTAATTAT 150
                      **************************** *******************************

consensus_3095#0      TATTATTATTCTCATTATTACTAACCAGCATCATTGGTGAAACTGCAGATAAACAGAATA 540
consensus_3095#1      TATTATTATTCTCATTATTACTAACCAGCATCATTGGTGAAACTGCAGATAAACAGAATA 210
                      ************************************************************

consensus_3095#0      TTATTGATTTACATTTTTTTTTGTATTTGAGTTCACAGAATATTT--------------- 585
consensus_3095#1      TTATTGATTTACATTTTTTTTTGTATT-GAGTTCACAGAATATTTCAGTTGAATTCCTTT 269
                      *************************** *****************               

consensus_3095#0      ------------------------------------------------------------
consensus_3095#1      TTTCACTTTGTAATTTCTATTCCATGGTACAAGAGTAAACAGTAGTCTATACATAAAGAT 329
                                                                                  

consensus_3095#0      ------------------------------------------------------------
consensus_3095#1      GATTCTTTTCATTGTTTCAATGGGTATTTTTTGTATTGATTGCCCATTCCACCTCAGACA 389
                                                                                  

consensus_3095#0      ----------------------------------------------------------
consensus_3095#1      TTCAGGTGATATATGCTTGGAATCTCTCTACTCTCCCCGTTTCTGTGATACTTTAATT 447
                                                                                




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)