These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3095#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [ATACACCAAGGTATTCCGTATCTAGAGATGACAGTAGTTGTAGTCCTTTCGGTCCGGTTCAAGATGTAACACAAAAGGTGTTCTGTTCAACTGAACCATTTGCTACGGATACAACTTTTCAAGTTCGAAGTGTTTATCCATTCCTTGATCTTCGAGTGTTGGTCTTTGAATCAAATTATTATCGATACGGAGTTCAACTGTGTAATTCTAATGGCCCTGTAATTAGTTTAAATATGCCATCTGAAGCATGTCGTCGTCAATTCATCGACTGGGCGTACGGATCCATTGCTGAAATGGAGGAATTACAACAACATCAACAAGTTAAGAAAAGTGAATGTGAACGAACTATTATTGTTAATTGTAAACGGAGCCCAACGAAGACTACTGCTAATGGTACTATTTCTATTATTAATGGCGATAGATGTGTCATGCCTTCCTCAAGAGTAACCGAAAAAGTTATCTTATTTAATACCTAATTATTATTATTATTCTCATTATTACTAACCAGCATCATTGGTGAAACTGCAGATAAACAGAATATTATTGATTTACATTTTTTTTTGTATTTGAGTTCACAGAATATTT] [+] EMBL CD114146 [ATACACCAAGGTATTCCGTATCTAGAGATGACAGTAGTTGTAGTCCTTTCGGTCCGGTTCAAGATGTAACACAAAAGGTGTTCTGTTCAACTGAACCATTTGCTACGGATACAACTTTTCAAGTTCGAAGTGTTTATCCATTCCTTGATCTTCGAGTGTTGGTCTTTGAATCAAATTATTATCGATACGGAGTTCAACTGTGTAATTCTAATGGCCCTGTAATTAGTTTAAATATGCCATCTGAAGCATGTCGTCGTCAATTCATCGACTGGGCGTACGGATCCATTGCTGAAATGGAGGAATTACAACAACATCAACAAGTTAAGAAAAGTGAATGTGAACGAACTATTATTGTTAATTGTAAACGGAGCCCAACGAAGACTACTGCTAATGGTACTATTTCTATTATTAATGGCGATAGATGTGTCATGCCTTCCTCAAGAGTAACCGAAAAAGTTATCTTATTTAATACCTAATTATTATTATTATTCTCATTATTACTAACCAGCATCATTGGTGAAACTGCAGATAAACAGAATATTATTGATTTACATTTTTTTTTGTATTTGAGTTCACAGAATATTT] consensusID : consensus_3095#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [TTCGGGCAAGGAAAACTATTATTGTTAATTGTAAACGGAGCCCAACGAAGACTACTGCTAATGGTACTATTTCTATTATTAATGGCGATAGATGTGTCATGCCTTCCTCAAGAGTAACTGAAAAAGTTATCTTATTTAATACCTAATTATTATTATTATTCTCATTATTACTAACCAGCATCATTGGTGAAACTGCAGATAAACAGAATATTATTGATTTACATTTTTTTTTGTATTGAGTTCACAGAATATTTCAGTTGAATTCCTTTTTTCACTTTGTAATTTCTATTCCATGGTACAAGAGTAAACAGTAGTCTATACATAAAGATGATTCTTTTCATTGTTTCAATGGGTATTTTTTGTATTGATTGCCCATTCCACCTCAGACATTCAGGTGATATATGCTTGGAATCTCTCTACTCTCCCCGTTTCTGTGATACTTTAATT] [+] EMBL AW062230 [TTCGGGCAAGGAAAACTATTATTGTTAATTGTAAACGGAGCCCAACGAAGACTACTGCTAATGGTACTATTTCTATTATTAATGGCGATAGATGTGTCATGCCTTCCTCAAGAGTAACTGAAAAAGTTATCTTATTTAATACCTAATTATTATTATTATTCTCATTATTACTAACCAGCATCATTGGTGAAACTGCAGATAAACAGAATATTATTGATTTACATTTTTTTTTGTATTGAGTTCACAGAATATTTCAGTTGAATTCCTTTTTTCACTTTGTAATTTCTATTCCATGGTACAAGAGTAAACAGTAGTCTATACATAAAGATGATTCTTTTCATTGTTTCAATGGGTATTTTTTGTATTGATTGCCCATTCCACCTCAGACATTCAGGTGATATATGCTTGGAATCTCTCTACTCTCCCCGTTTCTGTGATACTTTAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3095#0 ATACACCAAGGTATTCCGTATCTAGAGATGACAGTAGTTGTAGTCCTTTCGGTCCGGTTC 60 consensus_3095#1 ------------------------------------------------------------ consensus_3095#0 AAGATGTAACACAAAAGGTGTTCTGTTCAACTGAACCATTTGCTACGGATACAACTTTTC 120 consensus_3095#1 ------------------------------------------------------------ consensus_3095#0 AAGTTCGAAGTGTTTATCCATTCCTTGATCTTCGAGTGTTGGTCTTTGAATCAAATTATT 180 consensus_3095#1 ------------------------------------------------------------ consensus_3095#0 ATCGATACGGAGTTCAACTGTGTAATTCTAATGGCCCTGTAATTAGTTTAAATATGCCAT 240 consensus_3095#1 ------------------------------------------------------------ consensus_3095#0 CTGAAGCATGTCGTCGTCAATTCATCGACTGGGCGTACGGATCCATTGCTGAAATGGAGG 300 consensus_3095#1 ------------------------------------------------------------ consensus_3095#0 AATTACAACAACATCAACAAGTTAAGAAAAGTGAATGTGAACGAACTATTATTGTTAATT 360 consensus_3095#1 -----------------------------TTCGGGCAAGGA-AAACTATTATTGTTAATT 30 * * * ***************** consensus_3095#0 GTAAACGGAGCCCAACGAAGACTACTGCTAATGGTACTATTTCTATTATTAATGGCGATA 420 consensus_3095#1 GTAAACGGAGCCCAACGAAGACTACTGCTAATGGTACTATTTCTATTATTAATGGCGATA 90 ************************************************************ consensus_3095#0 GATGTGTCATGCCTTCCTCAAGAGTAACCGAAAAAGTTATCTTATTTAATACCTAATTAT 480 consensus_3095#1 GATGTGTCATGCCTTCCTCAAGAGTAACTGAAAAAGTTATCTTATTTAATACCTAATTAT 150 **************************** ******************************* consensus_3095#0 TATTATTATTCTCATTATTACTAACCAGCATCATTGGTGAAACTGCAGATAAACAGAATA 540 consensus_3095#1 TATTATTATTCTCATTATTACTAACCAGCATCATTGGTGAAACTGCAGATAAACAGAATA 210 ************************************************************ consensus_3095#0 TTATTGATTTACATTTTTTTTTGTATTTGAGTTCACAGAATATTT--------------- 585 consensus_3095#1 TTATTGATTTACATTTTTTTTTGTATT-GAGTTCACAGAATATTTCAGTTGAATTCCTTT 269 *************************** ***************** consensus_3095#0 ------------------------------------------------------------ consensus_3095#1 TTTCACTTTGTAATTTCTATTCCATGGTACAAGAGTAAACAGTAGTCTATACATAAAGAT 329 consensus_3095#0 ------------------------------------------------------------ consensus_3095#1 GATTCTTTTCATTGTTTCAATGGGTATTTTTTGTATTGATTGCCCATTCCACCTCAGACA 389 consensus_3095#0 ---------------------------------------------------------- consensus_3095#1 TTCAGGTGATATATGCTTGGAATCTCTCTACTCTCCCCGTTTCTGTGATACTTTAATT 447 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||