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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3104 cluster # 3104       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3104#0 length = 281 sequences # 1  
consensus_3104#1 length = 217 sequences # 1  

consensusID : consensus_3104#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence
                              [ATATTATGTCTATTATTTACTCTATAACTCCAGAACAAGCTCGTCGAGATGATATGGAATCACTTGGTTATGTGTTAATGTATTTCTTACGTGGTAGTCTTCCATGGCAAGGCTTAAAGGCTGGTTCCATTCGTCAAAAATATGAACGTATTAGCGAAGAGAAAATGCAAACACCCGTGGAAGTTTTATGTGAAGGTTATCCAGGTACATTATTTAGAAGTTGCTTTTTTTTAATTCACCTGTCTGAATAAGTTCATATTTTAATTGTTAAAAAGATTAGT]

[+] EMBL CD119378             [ATATTATGTCTATTATTTACTCTATAACTCCAGAACAAGCTCGTCGAGATGATATGGAATCACTTGGTTATGTGTTAATGTATTTCTTACGTGGTAGTCTTCCATGGCAAGGCTTAAAGGCTGGTTCCATTCGTCAAAAATATGAACGTATTAGCGAAGAGAAAATGCAAACACCCGTGGAAGTTTTATGTGAAGGTTATCCAGGTACATTATTTAGAAGTTGCTTTTTTTTAATTCACCTGTCTGAATAAGTTCATATTTTAATTGTTAAAAAGATTAGT]


>consensus_3104#0 ATATTATGTCTATTATTTACTCTATAACTCCAGAACAAGCTCGTCGAGATGATATGGAAT CACTTGGTTATGTGTTAATGTATTTCTTACGTGGTAGTCTTCCATGGCAAGGCTTAAAGG CTGGTTCCATTCGTCAAAAATATGAACGTATTAGCGAAGAGAAAATGCAAACACCCGTGG AAGTTTTATGTGAAGGTTATCCAGGTACATTATTTAGAAGTTGCTTTTTTTTAATTCACC TGTCTGAATAAGTTCATATTTTAATTGTTAAAAAGATTAGT



consensusID : consensus_3104#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 217
fasta sequence
                              [TTTAATAGATTCCAATCAAAAATAAAATCATAAGTAAATCCTTCACGTTGAAATAAACCACGAAACAAATTTCTTAAATAAGAATAATTCGGTTCGTTATCAAAACGCATCCCACGACAGTAATTAAGGTAGACAGCCATTTCAACTGGATAACCTTCACATAAAACTTCCACGGGTGTTTGCATTTTCTTTTCGCTAATACGTTCATATTTTTGAC]

[+] EMBL CD114200             [TTTAATAGATTCCAATCAAAAATAAAATCATAAGTAAATCCTTCACGTTGAAATAAACCACGAAACAAATTTCTTAAATAAGAATAATTCGGTTCGTTATCAAAACGCATCCCACGACAGTAATTAAGGTAGACAGCCATTTCAACTGGATAACCTTCACATAAAACTTCCACGGGTGTTTGCATTTTCTTTTCGCTAATACGTTCATATTTTTGAC]


>consensus_3104#1 TTTAATAGATTCCAATCAAAAATAAAATCATAAGTAAATCCTTCACGTTGAAATAAACCA CGAAACAAATTTCTTAAATAAGAATAATTCGGTTCGTTATCAAAACGCATCCCACGACAG TAATTAAGGTAGACAGCCATTTCAACTGGATAACCTTCACATAAAACTTCCACGGGTGTT TGCATTTTCTTTTCGCTAATACGTTCATATTTTTGAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3104#0      ATATTATGTCTATTATTTACTCTATAACTCCAGAACAAGCTCGTCGAGATGATATGGAAT 60
consensus_3104#1      -------------------TTTAATAGATTCCAATCAAA---AATAAAATCATAAGTAAA 38
                                          *  ***  * *  * ***        * ** *** * ** 

consensus_3104#0      CACTTGGTTATGTGTTAATGTATTTCTTACGTGGTAGTCTTCCATGGCAAGGCTTAAAGG 120
consensus_3104#1      TCCTT-----CACGTTGAAATAAACC--ACGAAACAAATTTCTTAAATAAGAAT------ 85
                        ***        *** *  **   *  ***    *   ***      ***  *      

consensus_3104#0      CTGGTTCCATTCGTCAAAAATATGAACGTATTAGCGAAGAGAAAATGCAAACACCCGTGG 180
consensus_3104#1      --AATTCGGTTCGTTATCAAAACGCATCCCACGAC-AGTAATTAAGGTAGACAGCCA--- 139
                          ***  ***** *  ** * * *        * *  *   ** * * *** **    

consensus_3104#0      AAGTTTTATGTGAAGGTTATCCAGGTACATTATTTAGAAGTTGCTTTTTTTTAATTCACC 240
consensus_3104#1      ---TTTCAACTGGATAACCTTCACATAAAACTTCCACGGGTGTTTGCATTTTCTTTTCGC 196
                         *** *  ** *     * **  ** *   *  *   **   *   ****  **   *

consensus_3104#0      TGTCTGAATAAGTTCATATTTTAATTGTTAAAAAGATTAGT 281
consensus_3104#1      T-----AATACGTTCATATTTTTGAC--------------- 217
                      *     **** ***********                   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)