These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3104#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [ATATTATGTCTATTATTTACTCTATAACTCCAGAACAAGCTCGTCGAGATGATATGGAATCACTTGGTTATGTGTTAATGTATTTCTTACGTGGTAGTCTTCCATGGCAAGGCTTAAAGGCTGGTTCCATTCGTCAAAAATATGAACGTATTAGCGAAGAGAAAATGCAAACACCCGTGGAAGTTTTATGTGAAGGTTATCCAGGTACATTATTTAGAAGTTGCTTTTTTTTAATTCACCTGTCTGAATAAGTTCATATTTTAATTGTTAAAAAGATTAGT] [+] EMBL CD119378 [ATATTATGTCTATTATTTACTCTATAACTCCAGAACAAGCTCGTCGAGATGATATGGAATCACTTGGTTATGTGTTAATGTATTTCTTACGTGGTAGTCTTCCATGGCAAGGCTTAAAGGCTGGTTCCATTCGTCAAAAATATGAACGTATTAGCGAAGAGAAAATGCAAACACCCGTGGAAGTTTTATGTGAAGGTTATCCAGGTACATTATTTAGAAGTTGCTTTTTTTTAATTCACCTGTCTGAATAAGTTCATATTTTAATTGTTAAAAAGATTAGT] consensusID : consensus_3104#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence [TTTAATAGATTCCAATCAAAAATAAAATCATAAGTAAATCCTTCACGTTGAAATAAACCACGAAACAAATTTCTTAAATAAGAATAATTCGGTTCGTTATCAAAACGCATCCCACGACAGTAATTAAGGTAGACAGCCATTTCAACTGGATAACCTTCACATAAAACTTCCACGGGTGTTTGCATTTTCTTTTCGCTAATACGTTCATATTTTTGAC] [+] EMBL CD114200 [TTTAATAGATTCCAATCAAAAATAAAATCATAAGTAAATCCTTCACGTTGAAATAAACCACGAAACAAATTTCTTAAATAAGAATAATTCGGTTCGTTATCAAAACGCATCCCACGACAGTAATTAAGGTAGACAGCCATTTCAACTGGATAACCTTCACATAAAACTTCCACGGGTGTTTGCATTTTCTTTTCGCTAATACGTTCATATTTTTGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3104#0 ATATTATGTCTATTATTTACTCTATAACTCCAGAACAAGCTCGTCGAGATGATATGGAAT 60 consensus_3104#1 -------------------TTTAATAGATTCCAATCAAA---AATAAAATCATAAGTAAA 38 * *** * * * *** * ** *** * ** consensus_3104#0 CACTTGGTTATGTGTTAATGTATTTCTTACGTGGTAGTCTTCCATGGCAAGGCTTAAAGG 120 consensus_3104#1 TCCTT-----CACGTTGAAATAAACC--ACGAAACAAATTTCTTAAATAAGAAT------ 85 *** *** * ** * *** * *** *** * consensus_3104#0 CTGGTTCCATTCGTCAAAAATATGAACGTATTAGCGAAGAGAAAATGCAAACACCCGTGG 180 consensus_3104#1 --AATTCGGTTCGTTATCAAAACGCATCCCACGAC-AGTAATTAAGGTAGACAGCCA--- 139 *** ***** * ** * * * * * * ** * * *** ** consensus_3104#0 AAGTTTTATGTGAAGGTTATCCAGGTACATTATTTAGAAGTTGCTTTTTTTTAATTCACC 240 consensus_3104#1 ---TTTCAACTGGATAACCTTCACATAAAACTTCCACGGGTGTTTGCATTTTCTTTTCGC 196 *** * ** * * ** ** * * * ** * **** ** * consensus_3104#0 TGTCTGAATAAGTTCATATTTTAATTGTTAAAAAGATTAGT 281 consensus_3104#1 T-----AATACGTTCATATTTTTGAC--------------- 217 * **** *********** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||