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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3115#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence
[ATTTTGATTTTTTCGAAGTTGAAAGATTTTCGCTTTTTCTTTTTAAGAAAACTGTTCATATTCTACAGTGATACAAGATGATAAAACAACCCAATATAATCATATCATTTTAAATCCCTCTAGTCAATCTACACTAGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATTTGATATAGGACAACAAGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATATGAGGCGTTTTTAGCCCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGATACATTAGATTTGCATAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAATTGATTCAAAACAACTAAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAACAATCATCGAAATCAGTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTTACAGTCCACATTACCAACAAATAATTCCTCTGTTGTATTACCAAATTTACAACCTGACGGACTAGTTCTTGTCAAAACATCAGTTGGTCAGTTAATATACTGTCCATCTAATCACTATAATAATAATGCCGATTCCTCAAAAATACATA]
[+] EMBL CD114345 [ATTTTGATTTTTTCGAAGTTGAAAGATTTTCGCTTTTTCTTTTTAAGAAAACTGTTCATATTCTACAGTGATACAAGATGATAAAACAACCCAATATAATCATATCATTTTAAATCCCTCTAGTCAATCTACACTAGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATTTGATATAGGACAACAAGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATATGAGGCGTTTTTAGCCCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGATACATTAGATTTGCATAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAATTGATTCAAAACAACTAAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAACAATCATCGAAATCAGTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTTACAGTCCACATTACCAACAAATAATTCCTCTGTTGTATTACCAAATTTACAACCTGACGGACTAGTTCTTGTCAAAACATCAGTTGGTCAGTTAATATACTGTCCATCTAATCACTATAATAATAATGCCGATTCCTCAAAAATACATA]
consensusID : consensus_3115#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[TATGCATTCTAATAATAGAGAATTAAAGAATAAAACTAATGGTTTATATCTTGAAAATCTACACAAGTACCCCTCTTCAACAGCTGTTAATAATAATGTTCAAAACAATTATGCCGTTAGTAATAAAAATTTAATTAAAGGTAAATCTCAAGAAAACTGTTCATATTCTACAGTGATACAAGATGATAAAACAACCCAATATAATCATATCAATTTAAATCCCTCTAGTCAATCTACACTAGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATTTGATATAAGACAACAAGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATATGAGGCGTTTTTAGCCCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGATACATTAGATTTGCATAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAATTGATTCAAAACAACTAAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAACAATCATCGAAATCAGTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTTACAGTCCACATTANCCAACAATAATTCCTCTGTTGT]
[+] EMBL CD178242 [TATGCATTCTAATAATAGAGAATTAAAGAATAAAACTAATGGTTTATATCTTGAAAATCTACACAAGTACCCCTCTTCAACAGCTGTTAATAATAATGTTCAAAACAATTATGCCGTTAGTAATAAAAATTTAATTAAAGGTAAATCTCAAGAAAACTGTTCATATTCTACAGTGATACAAGATGATAAAACAACCCAATATAATCATATCAATTTAAATCCCTCTAGTCAATCTACACTAGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATTTGATATAAGACAACAAGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATATGAGGCGTTTTTAGCCCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGATACATTAGATTTGCATAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAATTGATTCAAAACAACTAAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAACAATCATCGAAATCAGTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTTACAGTCCACATTANCCAACAATAATTCCTCTGTTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3115#0 ------------------------------------------------------------
consensus_3115#1 TATGCATTCTAATAATAGAGAATTAAAGAATAAAACTAATGGTTTATATCTTGAAAATCT 60
consensus_3115#0 -----------------------------------------ATTTTGATTTTTTCGAAGT 19
consensus_3115#1 ACACAAGTACCCCTCTTCAACAGCTGTTAATAATAATGTTCAAAACAATTATGCCGTTAG 120
* *** * **
consensus_3115#0 TGAAAGATTTTCGCTTT----TTCTTTTTAAGAAAACTGTTCATATTCTACAGTGATACA 75
consensus_3115#1 TAATAAAAATTTAATTAAAGGTAAATCTCAAGAAAACTGTTCATATTCTACAGTGATACA 180
* * * * ** ** * * * *******************************
consensus_3115#0 AGATGATAAAACAACCCAATATAATCATATCATTTTAAATCCCTCTAGTCAATCTACACT 135
consensus_3115#1 AGATGATAAAACAACCCAATATAATCATATCAATTTAAATCCCTCTAGTCAATCTACACT 240
******************************** ***************************
consensus_3115#0 AGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATTTGATATAGGACAACA 195
consensus_3115#1 AGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATTTGATATAAGACAACA 300
**************************************************** *******
consensus_3115#0 AGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATATGAGGCGTTTTTAGC 255
consensus_3115#1 AGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATATGAGGCGTTTTTAGC 360
************************************************************
consensus_3115#0 CCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGATACATTAGATTTGCA 315
consensus_3115#1 CCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGATACATTAGATTTGCA 420
************************************************************
consensus_3115#0 TAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAATTGATTCAAAACAACT 375
consensus_3115#1 TAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAATTGATTCAAAACAACT 480
************************************************************
consensus_3115#0 AAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAACAATCATCGAAATCA 435
consensus_3115#1 AAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAACAATCATCGAAATCA 540
************************************************************
consensus_3115#0 GTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTTACAGTCCACATTACC 495
consensus_3115#1 GTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTTACAGTCCACATTANC 600
********************************************************** *
consensus_3115#0 AACAAATAATTCCTCTGTTGTATTACCAAATTTACAACCTGACGGACTAGTTCTTGTCAA 555
consensus_3115#1 CAACAATAATTCCTCTGTTGT--------------------------------------- 621
* *****************
consensus_3115#0 AACATCAGTTGGTCAGTTAATATACTGTCCATCTAATCACTATAATAATAATGCCGATTC 615
consensus_3115#1 ------------------------------------------------------------
consensus_3115#0 CTCAAAAATACATA 629
consensus_3115#1 --------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||