cluster # 312

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Schistosoma mansoni
cluster # 312 cluster # 312 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_312#0 length = 498 sequences # 1

consensus_312#1 length = 127 sequences # 1

consensusID : consensus_312#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 498
fasta sequence

                              [GTCGGCACGAGTAAATTTACAGTCTGGTAGATAGTGTACCTTTTGTATCATGATTCATTGAGGTATTGTAGGTTATTCTATTTCCCGAAAGTTCTCGATTTTATATAGTTCATTCTATTAATTGTAATTAGTTAGTGAGGTTGGATAAGTTACTGAGTAAGTATAATTAGAGAAATTATATAGGTAGTGATAAATTATTCGTGTGATCTGATATCTGGTTAGTGACTTTNTTTNTCGAGTTNGAGAAATNGCTGAGTGTGGTTGGTTNTTTNGGNCCGNGCTCNTTCTANTTNTGGGGGGAAAGNGCCTGNAGNTTNNGNTTGCCCCTNGGTCTNGNGAANGTTNTTTCCCACGCTTTCGANCGNTTGGGNTAATNNANCCCCTTGGTGGGTTACGGACTAGNCACTTTCGGANAACTTCGCNNTNTACCCGCCGGNNGGGAATNCCGTNGGGTTNGNTTACCNGNGNNGGTTCCNTTTTTTNCCGAACTNGGCCCCN]

[+] EMBL SM068                [GTCGGCACGAGTAAATTTACAGTCTGGTAGATAGTGTACCTTTTGTATCATGATTCATTGAGGTATTGTAGGTTATTCTATTTCCCGAAAGTTCTCGATTTTATATAGTTCATTCTATTAATTGTAATTAGTTAGTGAGGTTGGATAAGTTACTGAGTAAGTATAATTAGAGAAATTATATAGGTAGTGATAAATTATTCGTGTGATCTGATATCTGGTTAGTGACTTTNTTTNTCGAGTTNGAGAAATNGCTGAGTGTGGTTGGTTNTTTNGGNCCGNGCTCNTTCTANTTNTGGGGGGAAAGNGCCTGNAGNTTNNGNTTGCCCCTNGGTCTNGNGAANGTTNTTTCCCACGCTTTCGANCGNTTGGGNTAATNNANCCCCTTGGTGGGTTACGGACTAGNCACTTTCGGANAACTTCGCNNTNTACCCGCCGGNNGGGAATNCCGTNGGGTTNGNTTACCNGNGNNGGTTCCNTTTTTTNCCGAACTNGGCCCCN]




>consensus_312#0
GTCGGCACGAGTAAATTTACAGTCTGGTAGATAGTGTACCTTTTGTATCATGATTCATTG
AGGTATTGTAGGTTATTCTATTTCCCGAAAGTTCTCGATTTTATATAGTTCATTCTATTA
ATTGTAATTAGTTAGTGAGGTTGGATAAGTTACTGAGTAAGTATAATTAGAGAAATTATA
TAGGTAGTGATAAATTATTCGTGTGATCTGATATCTGGTTAGTGACTTTNTTTNTCGAGT
TNGAGAAATNGCTGAGTGTGGTTGGTTNTTTNGGNCCGNGCTCNTTCTANTTNTGGGGGG
AAAGNGCCTGNAGNTTNNGNTTGCCCCTNGGTCTNGNGAANGTTNTTTCCCACGCTTTCG
ANCGNTTGGGNTAATNNANCCCCTTGGTGGGTTACGGACTAGNCACTTTCGGANAACTTC
GCNNTNTACCCGCCGGNNGGGAATNCCGTNGGGTTNGNTTACCNGNGNNGGTTCCNTTTT
TTNCCGAACTNGGCCCCN

consensusID : consensus_312#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 127
fasta sequence

                              [GGCCGAAAGTTCTCTCGTTTTATATAGTTCGGTCTATTAGTTGTAATTAGTTAGTGAGGTTGATAAGTTGCTGAGTAAGTATAATTAGAGAAATTATATAGGTAGTGATAAATTATTGTTGACTATA]

[+] EMBL AA952783             [GGCCGAAAGTTCTCTCGTTTTATATAGTTCGGTCTATTAGTTGTAATTAGTTAGTGAGGTTGATAAGTTGCTGAGTAAGTATAATTAGAGAAATTATATAGGTAGTGATAAATTATTGTTGACTATA]




>consensus_312#1
GGCCGAAAGTTCTCTCGTTTTATATAGTTCGGTCTATTAGTTGTAATTAGTTAGTGAGGT
TGATAAGTTGCTGAGTAAGTATAATTAGAGAAATTATATAGGTAGTGATAAATTATTGTT
GACTATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_312#0      GTCGGCACGAGTAAATTTACAGTCTGGTAGATAGTGTACCTTTTGTATCATGATTCATTG 60
consensus_312#1      ------------------------------------------------------------
                                                                                 

consensus_312#0      AGGTATTGTAGGTTATTCTATTTCCCGAAAGTTCTCG-ATTTTATATAGTTCATTCTATT 119
consensus_312#1      ----------------------GGCCGAAAGTTCTCTCGTTTTATATAGTTCGGTCTATT 38
                                             ************   *************  ******

consensus_312#0      AATTGTAATTAGTTAGTGAGGTTGGATAAGTTACTGAGTAAGTATAATTAGAGAAATTAT 179
consensus_312#1      AGTTGTAATTAGTTAGTGAGGTTG-ATAAGTTGCTGAGTAAGTATAATTAGAGAAATTAT 97
                     * ********************** ******* ***************************

consensus_312#0      ATAGGTAGTGATAAATTATTCGTGTGATCTGATATCTGGTTAGTGACTTTNTTTNTCGAG 239
consensus_312#1      ATAGGTAGTGATAAATTATT-GT-TGACTATA---------------------------- 127
                     ******************** ** ***    *                            

consensus_312#0      TTNGAGAAATNGCTGAGTGTGGTTGGTTNTTTNGGNCCGNGCTCNTTCTANTTNTGGGGG 299
consensus_312#1      ------------------------------------------------------------
                                                                                 

consensus_312#0      GAAAGNGCCTGNAGNTTNNGNTTGCCCCTNGGTCTNGNGAANGTTNTTTCCCACGCTTTC 359
consensus_312#1      ------------------------------------------------------------
                                                                                 

consensus_312#0      GANCGNTTGGGNTAATNNANCCCCTTGGTGGGTTACGGACTAGNCACTTTCGGANAACTT 419
consensus_312#1      ------------------------------------------------------------
                                                                                 

consensus_312#0      CGCNNTNTACCCGCCGGNNGGGAATNCCGTNGGGTTNGNTTACCNGNGNNGGTTCCNTTT 479
consensus_312#1      ------------------------------------------------------------
                                                                                 

consensus_312#0      TTTNCCGAACTNGGCCCCN 498
consensus_312#1      -------------------