These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3138#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [TCAGTGTAGATTAGATGGACATAAACCGACCAGCATATCCAGCCAATTTTTGCAATAAACATGAAAGATAAATTGATAAGAGTGTATCACATCAGGATCTCTGGTTATTTTGTTTTAAGGACAACTTCCAACTTTATGTAGGTTACTTGCTACTTCTGTTGTAATTTAATAGGGTTTCCCTTCCTAATTTACTTGGCTTTCACTGTCTATTTATGTAGGTTAGCACCAGTTCAGAAGAAGTGGATTTGAAAGGAAATCAACAGGATTTGTTTTCCTTTTCTCAAACTGTTACTCCATGGTGTCTTCGTAAGGGTGATAAAAATAATCCTAATTCTGCAACGATTAATCAAGAAGGATTGCCTTCAACAATACAACTGACTCATTTTGTTGCTAACAATCAACCTACAGATGAATTAAAACTATTTGTTAGTTTTGTTGAAAGGTTAGTTTACTTCTGATCTGCACTAGTGATTTGTTGCTTTAATTTGAGAATTCCACATTATACTAAACATCTAATATTGAATAAAACCATTAATTATAATAAAAACGGAGAAA] [+] EMBL CD114905 [TCAGTGTAGATTAGATGGACATAAACCGACCAGCATATCCAGCCAATTTTTGCAATAAACATGAAAGATAAATTGATAAGAGTGTATCACATCAGGATCTCTGGTTATTTTGTTTTAAGGACAACTTCCAACTTTATGTAGGTTACTTGCTACTTCTGTTGTAATTTAATAGGGTTTCCCTTCCTAATTTACTTGGCTTTCACTGTCTATTTATGTAGGTTAGCACCAGTTCAGAAGAAGTGGATTTGAAAGGAAATCAACAGGATTTGTTTTCCTTTTCTCAAACTGTTACTCCATGGTGTCTTCGTAAGGGTGATAAAAATAATCCTAATTCTGCAACGATTAATCAAGAAGGATTGCCTTCAACAATACAACTGACTCATTTTGTTGCTAACAATCAACCTACAGATGAATTAAAACTATTTGTTAGTTTTGTTGAAAGGTTAGTTTACTTCTGATCTGCACTAGTGATTTGTTGCTTTAATTTGAGAATTCCACATTATACTAAACATCTAATATTGAATAAAACCATTAATTATAATAAAAACGGAGAAA] consensusID : consensus_3138#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 325 fasta sequence [TAGATGAATTACTTCTTCCTCACACAGCGAAAGATGCTAATAATGTTCCCGAACATGAAGATTTCTATTTTTCTGATGGAAAACTTATTTATCCATCAGTTATGGATGTGAAAGAAGATACCTGTTCAGCGAAGCCACAGGTTAGCACCAGTTCAGAAGAAGTGGATTTGAAAGGAAATCAACAGGATTTGTTTTCCTTTTCTCAAACTGTTACTCCATGGTGTCTTCGTAAGGGTGATAAAAATAATCCTAATTCTGCAACGATTAATCAAGAAGGATTGCCTTCAACAATACAACTGACTCATTTTGTTGCTAACCATAGGGC] [-] EMBL CD167150 [TAGATGAATTACTTCTTCCTCACACAGCGAAAGATGCTAATAATGTTCCCGAACATGAAGATTTCTATTTTTCTGATGGAAAACTTATTTATCCATCAGTTATGGATGTGAAAGAAGATACCTGTTCAGCGAAGCCACAGGTTAGCACCAGTTCAGAAGAAGTGGATTTGAAAGGAAATCAACAGGATTTGTTTTCCTTTTCTCAAACTGTTACTCCATGGTGTCTTCGTAAGGGTGATAAAAATAATCCTAATTCTGCAACGATTAATCAAGAAGGATTGCCTTCAACAATACAACTGACTCATTTTGTTGCTAACCATAGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3138#0 TCAGTGTAGATTAGATGGACATAAACCGACCAGCATATCCAGCCAATTTTTGCAATAAAC 60 consensus_3138#1 ------------------------------------------------------------ consensus_3138#0 ATGAAAGATAAATTGATAAGAGTGTATCACATCAGGATCTCTGGTTATTTTGTTTTAAGG 120 consensus_3138#1 ------------------TAGATGAATTACTTCTTCCTCACACAGCGAAAGATGCTAATA 42 ** ** ** ** ** * * *** consensus_3138#0 ACAACTTCCAACTTTATGTAGGTTACTTGCTACTTCTGTTGTAATTTAATAGGGTTTCCC 180 consensus_3138#1 ATGTTCCCGAAC---ATGAAGATTTCTATTTTTCTGATGGAAAACTTATTTATCCATCAG 99 * * *** *** ** ** ** * * ** *** * ** consensus_3138#0 TTCCTAATTTACTTGGCTTTCACTGTCTATTTATGT---AGGTTAGCACCAGTTCAGAAG 237 consensus_3138#1 TTATGGATGTGAAAGAAGATACCTGTTCAGCGAAGCCACAGGTTAGCACCAGTTCAGAAG 159 ** ** * * * **** * * * ********************* consensus_3138#0 AAGTGGATTTGAAAGGAAATCAACAGGATTTGTTTTCCTTTTCTCAAACTGTTACTCCAT 297 consensus_3138#1 AAGTGGATTTGAAAGGAAATCAACAGGATTTGTTTTCCTTTTCTCAAACTGTTACTCCAT 219 ************************************************************ consensus_3138#0 GGTGTCTTCGTAAGGGTGATAAAAATAATCCTAATTCTGCAACGATTAATCAAGAAGGAT 357 consensus_3138#1 GGTGTCTTCGTAAGGGTGATAAAAATAATCCTAATTCTGCAACGATTAATCAAGAAGGAT 279 ************************************************************ consensus_3138#0 TGCCTTCAACAATACAACTGACTCATTTTGTTGCTAACAATCAACCTACAGATGAATTAA 417 consensus_3138#1 TGCCTTCAACAATACAACTGACTCATTTTGTTGCTAACCATAGGGC-------------- 325 ************************************** ** * consensus_3138#0 AACTATTTGTTAGTTTTGTTGAAAGGTTAGTTTACTTCTGATCTGCACTAGTGATTTGTT 477 consensus_3138#1 ------------------------------------------------------------ consensus_3138#0 GCTTTAATTTGAGAATTCCACATTATACTAAACATCTAATATTGAATAAAACCATTAATT 537 consensus_3138#1 ------------------------------------------------------------ consensus_3138#0 ATAATAAAAACGGAGAAA 555 consensus_3138#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||