cluster # 3150

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Schistosoma mansoni
cluster # 3150 cluster # 3150 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3150#0 length = 424 sequences # 1

consensus_3150#1 length = 274 sequences # 1

consensusID : consensus_3150#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence

                              [AATTGGTTATTGAACAAACGTCGTTTATAAACATCCCTGATACTTCGTCGTTGATAAATGATGATATTGTCGGGGAAGAGGATATTAAACTGAAAAATTGCTTTGCAAACGAAATTGGATCTTATAAAGTAAATGTAGATCCTCAGAATAATATTCAAATCAGTGATGTTGGTATACCTACGCCAAATATTCGTAAATATAATGAATTAAAAGTTGCAGCATTCGAAATAAAAAATAAACTGATTAAATGAGACACTAAGAAATGCCCTAAAAAACAGAATAACAATCGTATGAAATGAGAATCATAAATTAAAAGCACGAGAATACTTTGCACCCAAACACAGTCAAGATAAATTTCATTCTGCTTAAAGTGGATTTGTAATTACGTTGGATACAAAATAAAACTCCAGTAAATGGACACTGG]

[+] EMBL CD196503             [AATTGGTTATTGAACAAACGTCGTTTATAAACATCCCTGATACTTCGTCGTTGATAAATGATGATATTGTCGGGGAAGAGGATATTAAACTGAAAAATTGCTTTGCAAACGAAATTGGATCTTATAAAGTAAATGTAGATCCTCAGAATAATATTCAAATCAGTGATGTTGGTATACCTACGCCAAATATTCGTAAATATAATGAATTAAAAGTTGCAGCATTCGAAATAAAAAATAAACTGATTAAATGAGACACTAAGAAATGCCCTAAAAAACAGAATAACAATCGTATGAAATGAGAATCATAAATTAAAAGCACGAGAATACTTTGCACCCAAACACAGTCAAGATAAATTTCATTCTGCTTAAAGTGGATTTGTAATTACGTTGGATACAAAATAAAACTCCAGTAAATGGACACTGG]




>consensus_3150#0
AATTGGTTATTGAACAAACGTCGTTTATAAACATCCCTGATACTTCGTCGTTGATAAATG
ATGATATTGTCGGGGAAGAGGATATTAAACTGAAAAATTGCTTTGCAAACGAAATTGGAT
CTTATAAAGTAAATGTAGATCCTCAGAATAATATTCAAATCAGTGATGTTGGTATACCTA
CGCCAAATATTCGTAAATATAATGAATTAAAAGTTGCAGCATTCGAAATAAAAAATAAAC
TGATTAAATGAGACACTAAGAAATGCCCTAAAAAACAGAATAACAATCGTATGAAATGAG
AATCATAAATTAAAAGCACGAGAATACTTTGCACCCAAACACAGTCAAGATAAATTTCAT
TCTGCTTAAAGTGGATTTGTAATTACGTTGGATACAAAATAAAACTCCAGTAAATGGACA
CTGG

consensusID : consensus_3150#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence

                              [TCATCGCTGACACAAAAGATATCGACCGAAGGAAAGTAAAAAACGAATTCTATCTACAGTTATTACTGTCTTCACATAAAAATCTGGTACAATGAGACACTAAGAAATGCCCTAAACAACAGAATAACAATCGTATGAAATGAGAATCATAAAATAAAAGCACGAGAATACTTTGCATCCAAACACAATCACGATCAATTTCATTCTGCTTAAAGTGGATTTGTAATTATGTTGGATACAAAATAAAACTCCAGTAAATGGACACTGGCTTCGA]

[+] EMBL CD069344             [TCATCGCTGACACAAAAGATATCGACCGAAGGAAAGTAAAAAACGAATTCTATCTACAGTTATTACTGTCTTCACATAAAAATCTGGTACAATGAGACACTAAGAAATGCCCTAAACAACAGAATAACAATCGTATGAAATGAGAATCATAAAATAAAAGCACGAGAATACTTTGCATCCAAACACAATCACGATCAATTTCATTCTGCTTAAAGTGGATTTGTAATTATGTTGGATACAAAATAAAACTCCAGTAAATGGACACTGGCTTCGA]




>consensus_3150#1
TCATCGCTGACACAAAAGATATCGACCGAAGGAAAGTAAAAAACGAATTCTATCTACAGT
TATTACTGTCTTCACATAAAAATCTGGTACAATGAGACACTAAGAAATGCCCTAAACAAC
AGAATAACAATCGTATGAAATGAGAATCATAAAATAAAAGCACGAGAATACTTTGCATCC
AAACACAATCACGATCAATTTCATTCTGCTTAAAGTGGATTTGTAATTATGTTGGATACA
AAATAAAACTCCAGTAAATGGACACTGGCTTCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3150#0      AATTGGTTATTGAACAAACGTCGTTTATAAACATCCCTGATACTTCGTCGTTGATAAATG 60
consensus_3150#1      ------------------------------------------------------------
                                                                                  

consensus_3150#0      ATGATATTGTCGGGGAAGAGGATATTAAACTGAAAAATTGCTTTGCAAACGAAATTGGAT 120
consensus_3150#1      ------------------------------------------------------------
                                                                                  

consensus_3150#0      CTTATAAAGTAAATGTAGATCCTCAGAATAATATTCAAATCAGTGATGTTGGTATACCTA 180
consensus_3150#1      ---------------------------TCATCGCTGACACAAAAGATATCG----ACCGA 29
                                                   *    * * *  *  *** * *    *** *

consensus_3150#0      CGCCAAATATTCGTAAATATAATGAATTAAAAGTTGCAGCATTCGAAATAAAAAATAAAC 240
consensus_3150#1      AGGAAAGTA---AAAAACGAATTCTATCTACAGTTATTACTGTCTTCACATAAA--AATC 84
                       *  ** **     ***   * *  **  * ****    *  **   * * ***  ** *

consensus_3150#0      TGATTAAATGAGACACTAAGAAATGCCCTAAAAAACAGAATAACAATCGTATGAAATGAG 300
consensus_3150#1      TGGTACAATGAGACACTAAGAAATGCCCTAAACAACAGAATAACAATCGTATGAAATGAG 144
                      ** *  ************************** ***************************

consensus_3150#0      AATCATAAATTAAAAGCACGAGAATACTTTGCACCCAAACACAGTCAAGATAAATTTCAT 360
consensus_3150#1      AATCATAAAATAAAAGCACGAGAATACTTTGCATCCAAACACAATCACGATCAATTTCAT 204
                      ********* *********************** ********* *** *** ********

consensus_3150#0      TCTGCTTAAAGTGGATTTGTAATTACGTTGGATACAAAATAAAACTCCAGTAAATGGACA 420
consensus_3150#1      TCTGCTTAAAGTGGATTTGTAATTATGTTGGATACAAAATAAAACTCCAGTAAATGGACA 264
                      ************************* **********************************

consensus_3150#0      CTGG------ 424
consensus_3150#1      CTGGCTTCGA 274
                      ****