These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3150#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [AATTGGTTATTGAACAAACGTCGTTTATAAACATCCCTGATACTTCGTCGTTGATAAATGATGATATTGTCGGGGAAGAGGATATTAAACTGAAAAATTGCTTTGCAAACGAAATTGGATCTTATAAAGTAAATGTAGATCCTCAGAATAATATTCAAATCAGTGATGTTGGTATACCTACGCCAAATATTCGTAAATATAATGAATTAAAAGTTGCAGCATTCGAAATAAAAAATAAACTGATTAAATGAGACACTAAGAAATGCCCTAAAAAACAGAATAACAATCGTATGAAATGAGAATCATAAATTAAAAGCACGAGAATACTTTGCACCCAAACACAGTCAAGATAAATTTCATTCTGCTTAAAGTGGATTTGTAATTACGTTGGATACAAAATAAAACTCCAGTAAATGGACACTGG] [+] EMBL CD196503 [AATTGGTTATTGAACAAACGTCGTTTATAAACATCCCTGATACTTCGTCGTTGATAAATGATGATATTGTCGGGGAAGAGGATATTAAACTGAAAAATTGCTTTGCAAACGAAATTGGATCTTATAAAGTAAATGTAGATCCTCAGAATAATATTCAAATCAGTGATGTTGGTATACCTACGCCAAATATTCGTAAATATAATGAATTAAAAGTTGCAGCATTCGAAATAAAAAATAAACTGATTAAATGAGACACTAAGAAATGCCCTAAAAAACAGAATAACAATCGTATGAAATGAGAATCATAAATTAAAAGCACGAGAATACTTTGCACCCAAACACAGTCAAGATAAATTTCATTCTGCTTAAAGTGGATTTGTAATTACGTTGGATACAAAATAAAACTCCAGTAAATGGACACTGG] consensusID : consensus_3150#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence [TCATCGCTGACACAAAAGATATCGACCGAAGGAAAGTAAAAAACGAATTCTATCTACAGTTATTACTGTCTTCACATAAAAATCTGGTACAATGAGACACTAAGAAATGCCCTAAACAACAGAATAACAATCGTATGAAATGAGAATCATAAAATAAAAGCACGAGAATACTTTGCATCCAAACACAATCACGATCAATTTCATTCTGCTTAAAGTGGATTTGTAATTATGTTGGATACAAAATAAAACTCCAGTAAATGGACACTGGCTTCGA] [+] EMBL CD069344 [TCATCGCTGACACAAAAGATATCGACCGAAGGAAAGTAAAAAACGAATTCTATCTACAGTTATTACTGTCTTCACATAAAAATCTGGTACAATGAGACACTAAGAAATGCCCTAAACAACAGAATAACAATCGTATGAAATGAGAATCATAAAATAAAAGCACGAGAATACTTTGCATCCAAACACAATCACGATCAATTTCATTCTGCTTAAAGTGGATTTGTAATTATGTTGGATACAAAATAAAACTCCAGTAAATGGACACTGGCTTCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3150#0 AATTGGTTATTGAACAAACGTCGTTTATAAACATCCCTGATACTTCGTCGTTGATAAATG 60 consensus_3150#1 ------------------------------------------------------------ consensus_3150#0 ATGATATTGTCGGGGAAGAGGATATTAAACTGAAAAATTGCTTTGCAAACGAAATTGGAT 120 consensus_3150#1 ------------------------------------------------------------ consensus_3150#0 CTTATAAAGTAAATGTAGATCCTCAGAATAATATTCAAATCAGTGATGTTGGTATACCTA 180 consensus_3150#1 ---------------------------TCATCGCTGACACAAAAGATATCG----ACCGA 29 * * * * * *** * * *** * consensus_3150#0 CGCCAAATATTCGTAAATATAATGAATTAAAAGTTGCAGCATTCGAAATAAAAAATAAAC 240 consensus_3150#1 AGGAAAGTA---AAAAACGAATTCTATCTACAGTTATTACTGTCTTCACATAAA--AATC 84 * ** ** *** * * ** * **** * ** * * *** ** * consensus_3150#0 TGATTAAATGAGACACTAAGAAATGCCCTAAAAAACAGAATAACAATCGTATGAAATGAG 300 consensus_3150#1 TGGTACAATGAGACACTAAGAAATGCCCTAAACAACAGAATAACAATCGTATGAAATGAG 144 ** * ************************** *************************** consensus_3150#0 AATCATAAATTAAAAGCACGAGAATACTTTGCACCCAAACACAGTCAAGATAAATTTCAT 360 consensus_3150#1 AATCATAAAATAAAAGCACGAGAATACTTTGCATCCAAACACAATCACGATCAATTTCAT 204 ********* *********************** ********* *** *** ******** consensus_3150#0 TCTGCTTAAAGTGGATTTGTAATTACGTTGGATACAAAATAAAACTCCAGTAAATGGACA 420 consensus_3150#1 TCTGCTTAAAGTGGATTTGTAATTATGTTGGATACAAAATAAAACTCCAGTAAATGGACA 264 ************************* ********************************** consensus_3150#0 CTGG------ 424 consensus_3150#1 CTGGCTTCGA 274 **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||