cluster # 3166

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Schistosoma mansoni
cluster # 3166 cluster # 3166 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3166#0 length = 551 sequences # 1

consensus_3166#1 length = 201 sequences # 1

consensusID : consensus_3166#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence

                              [AAGCAAACATCTTCAGTCAATAATGATGTTCGTAAAGTTGGTTATGATGGTGTTACTTCTTCAGATCCACAGAAATCATCCAAAGACTCTGATGTTTTACAAATGATAGATGAATTACAAAAGAATATCACTAATAACAATGATAATAATGTTAAAAATAAATTATCTGTACATTTAGCTCCAAAGGTTGATTATAGTGTAGGACTTCAATGTATTGAATGTTCTAAAGAATTAAGTACAAAAGAACATTATATGGAACATTTTCAAAAAGAACATGGATCAAAATGTAGTCGTGAATCGTTTTATCGTTGTTTTGGTGCATGTAAACGTCTTCTACCAAATATTGATGATTTTCGTGAACATTTAACTGAATGTCTTCATGCGCAATCTATTTATTATTCAACATTTGGTCATTTGTACAACAAAGATAAAGCATTCGATTTGTTCAATGTTGATTTATCGCCAATAAATATAGAGAATAATAATAATAATAATAAGCATACAAATAATGAACTCCAAGAACAGTTAAGTGTAAATAATACTGATCGAAT]

[+] EMBL CD134596             [AAGCAAACATCTTCAGTCAATAATGATGTTCGTAAAGTTGGTTATGATGGTGTTACTTCTTCAGATCCACAGAAATCATCCAAAGACTCTGATGTTTTACAAATGATAGATGAATTACAAAAGAATATCACTAATAACAATGATAATAATGTTAAAAATAAATTATCTGTACATTTAGCTCCAAAGGTTGATTATAGTGTAGGACTTCAATGTATTGAATGTTCTAAAGAATTAAGTACAAAAGAACATTATATGGAACATTTTCAAAAAGAACATGGATCAAAATGTAGTCGTGAATCGTTTTATCGTTGTTTTGGTGCATGTAAACGTCTTCTACCAAATATTGATGATTTTCGTGAACATTTAACTGAATGTCTTCATGCGCAATCTATTTATTATTCAACATTTGGTCATTTGTACAACAAAGATAAAGCATTCGATTTGTTCAATGTTGATTTATCGCCAATAAATATAGAGAATAATAATAATAATAATAAGCATACAAATAATGAACTCCAAGAACAGTTAAGTGTAAATAATACTGATCGAAT]




>consensus_3166#0
AAGCAAACATCTTCAGTCAATAATGATGTTCGTAAAGTTGGTTATGATGGTGTTACTTCT
TCAGATCCACAGAAATCATCCAAAGACTCTGATGTTTTACAAATGATAGATGAATTACAA
AAGAATATCACTAATAACAATGATAATAATGTTAAAAATAAATTATCTGTACATTTAGCT
CCAAAGGTTGATTATAGTGTAGGACTTCAATGTATTGAATGTTCTAAAGAATTAAGTACA
AAAGAACATTATATGGAACATTTTCAAAAAGAACATGGATCAAAATGTAGTCGTGAATCG
TTTTATCGTTGTTTTGGTGCATGTAAACGTCTTCTACCAAATATTGATGATTTTCGTGAA
CATTTAACTGAATGTCTTCATGCGCAATCTATTTATTATTCAACATTTGGTCATTTGTAC
AACAAAGATAAAGCATTCGATTTGTTCAATGTTGATTTATCGCCAATAAATATAGAGAAT
AATAATAATAATAATAAGCATACAAATAATGAACTCCAAGAACAGTTAAGTGTAAATAAT
ACTGATCGAAT

consensusID : consensus_3166#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence

                              [AATAATGTTAAAAATAAATTATCTGTACATTTAGCTCCAAAGGTTGATTATAGTGTAGGACTTCAATGTATTGAATGTTCTAAAGAATTAAGTACAAAAGAACATTATATGGAACATTTTCAAAACATGGATCAAAATGTAGTCGTGAATCGTTTTATCGTTGTTTTGGTGCATGTAGACGTCTTCTACCAGGGGGTGATG]

[-] EMBL CD115475             [AATAATGTTAAAAATAAATTATCTGTACATTTAGCTCCAAAGGTTGATTATAGTGTAGGACTTCAATGTATTGAATGTTCTAAAGAATTAAGTACAAAAGAACATTATATGGAACATTTTCAAAACATGGATCAAAATGTAGTCGTGAATCGTTTTATCGTTGTTTTGGTGCATGTAGACGTCTTCTACCAGGGGGTGATG]




>consensus_3166#1
AATAATGTTAAAAATAAATTATCTGTACATTTAGCTCCAAAGGTTGATTATAGTGTAGGA
CTTCAATGTATTGAATGTTCTAAAGAATTAAGTACAAAAGAACATTATATGGAACATTTT
CAAAACATGGATCAAAATGTAGTCGTGAATCGTTTTATCGTTGTTTTGGTGCATGTAGAC
GTCTTCTACCAGGGGGTGATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3166#0      AAGCAAACATCTTCAGTCAATAATGATGTTCGTAAAGTTGGTTATGATGGTGTTACTTCT 60
consensus_3166#1      ------------------------------------------------------------
                                                                                  

consensus_3166#0      TCAGATCCACAGAAATCATCCAAAGACTCTGATGTTTTACAAATGATAGATGAATTACAA 120
consensus_3166#1      ------------------------------------------------------------
                                                                                  

consensus_3166#0      AAGAATATCACTAATAACAATGATAATAATGTTAAAAATAAATTATCTGTACATTTAGCT 180
consensus_3166#1      ------------------------AATAATGTTAAAAATAAATTATCTGTACATTTAGCT 36
                                              ************************************

consensus_3166#0      CCAAAGGTTGATTATAGTGTAGGACTTCAATGTATTGAATGTTCTAAAGAATTAAGTACA 240
consensus_3166#1      CCAAAGGTTGATTATAGTGTAGGACTTCAATGTATTGAATGTTCTAAAGAATTAAGTACA 96
                      ************************************************************

consensus_3166#0      AAAGAACATTATATGGAACATTTTCAAAAAGAACATGGATCAAAATGTAGTCGTGAATCG 300
consensus_3166#1      AAAGAACATTATATGGAACATTTTCAAAA----CATGGATCAAAATGTAGTCGTGAATCG 152
                      *****************************    ***************************

consensus_3166#0      TTTTATCGTTGTTTTGGTGCATGTAAACGTCTTCTACCAAATATTGATGATTTTCGTGAA 360
consensus_3166#1      TTTTATCGTTGTTTTGGTGCATGTAGACGTCTTCTACCAGGGGGTGATG----------- 201
                      ************************* *************     *****           

consensus_3166#0      CATTTAACTGAATGTCTTCATGCGCAATCTATTTATTATTCAACATTTGGTCATTTGTAC 420
consensus_3166#1      ------------------------------------------------------------
                                                                                  

consensus_3166#0      AACAAAGATAAAGCATTCGATTTGTTCAATGTTGATTTATCGCCAATAAATATAGAGAAT 480
consensus_3166#1      ------------------------------------------------------------
                                                                                  

consensus_3166#0      AATAATAATAATAATAAGCATACAAATAATGAACTCCAAGAACAGTTAAGTGTAAATAAT 540
consensus_3166#1      ------------------------------------------------------------
                                                                                  

consensus_3166#0      ACTGATCGAAT 551
consensus_3166#1      -----------