cluster # 3170

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Schistosoma mansoni
cluster # 3170 cluster # 3170 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3170#0 length = 380 sequences # 1

consensus_3170#1 length = 326 sequences # 1

consensusID : consensus_3170#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [CATATCAAATATTATTCAATCCCAACATTAGGGGCTAGATGACAAGATATTGGTGATCGATTAGTACAGACTATTAACTCTCAACAAAATACAAAATGAAGTGGGGGGATTGGAATCTGTCCTTTTGGGATTCCGAAATATAGTGTAGTACATACATCAGCCCACCTTAGTTGTATTGAAAATTTTGTTAACGTAAACTACCTAACATTTTGCAACACGTAAATTCGTACTACTAGTGTCCCATATAAGTAGCAATCAGCCATCTTGCAAATATCAGAAAGTGTGAAGGAAAAATTAGATAGGCATTAATGACAAACTTTCTTGGTCCAGACAACTGAACAATCAAATTAGGTTGCAGAAATTTGGACATTTTGTAAGTC]

[+] EMBL CD115615             [CATATCAAATATTATTCAATCCCAACATTAGGGGCTAGATGACAAGATATTGGTGATCGATTAGTACAGACTATTAACTCTCAACAAAATACAAAATGAAGTGGGGGGATTGGAATCTGTCCTTTTGGGATTCCGAAATATAGTGTAGTACATACATCAGCCCACCTTAGTTGTATTGAAAATTTTGTTAACGTAAACTACCTAACATTTTGCAACACGTAAATTCGTACTACTAGTGTCCCATATAAGTAGCAATCAGCCATCTTGCAAATATCAGAAAGTGTGAAGGAAAAATTAGATAGGCATTAATGACAAACTTTCTTGGTCCAGACAACTGAACAATCAAATTAGGTTGCAGAAATTTGGACATTTTGTAAGTC]




>consensus_3170#0
CATATCAAATATTATTCAATCCCAACATTAGGGGCTAGATGACAAGATATTGGTGATCGA
TTAGTACAGACTATTAACTCTCAACAAAATACAAAATGAAGTGGGGGGATTGGAATCTGT
CCTTTTGGGATTCCGAAATATAGTGTAGTACATACATCAGCCCACCTTAGTTGTATTGAA
AATTTTGTTAACGTAAACTACCTAACATTTTGCAACACGTAAATTCGTACTACTAGTGTC
CCATATAAGTAGCAATCAGCCATCTTGCAAATATCAGAAAGTGTGAAGGAAAAATTAGAT
AGGCATTAATGACAAACTTTCTTGGTCCAGACAACTGAACAATCAAATTAGGTTGCAGAA
ATTTGGACATTTTGTAAGTC

consensusID : consensus_3170#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 326
fasta sequence

                              [GGGTAAGTGTTCATCGGTTTGGTAACAATCGCCACCAAACTAATTACATAGTTTTCTGAGGACACCTATTCCAACTCAGAATTTCTAATCACATACTTCTCTACCATCGATCATTCAAAAGAAGTCTGTAGTTACTGTTGGCACATTTAATAAGATCATATCAAATATTATTCAATCCCAACATTAGGGGCTAGATGACAAGATATTGGTGATCGATTAGTACAGACAAAAAACTCTCAACAAAATACAAAATGAAGTGATCTTAATTGGAATCTGTCCTTTTGGGATTCCGAAATATAGTGTAGTACATACATCAGTTTACCTTA]

[-] EMBL CD192199             [GGGTAAGTGTTCATCGGTTTGGTAACAATCGCCACCAAACTAATTACATAGTTTTCTGAGGACACCTATTCCAACTCAGAATTTCTAATCACATACTTCTCTACCATCGATCATTCAAAAGAAGTCTGTAGTTACTGTTGGCACATTTAATAAGATCATATCAAATATTATTCAATCCCAACATTAGGGGCTAGATGACAAGATATTGGTGATCGATTAGTACAGACAAAAAACTCTCAACAAAATACAAAATGAAGTGATCTTAATTGGAATCTGTCCTTTTGGGATTCCGAAATATAGTGTAGTACATACATCAGTTTACCTTA]




>consensus_3170#1
GGGTAAGTGTTCATCGGTTTGGTAACAATCGCCACCAAACTAATTACATAGTTTTCTGAG
GACACCTATTCCAACTCAGAATTTCTAATCACATACTTCTCTACCATCGATCATTCAAAA
GAAGTCTGTAGTTACTGTTGGCACATTTAATAAGATCATATCAAATATTATTCAATCCCA
ACATTAGGGGCTAGATGACAAGATATTGGTGATCGATTAGTACAGACAAAAAACTCTCAA
CAAAATACAAAATGAAGTGATCTTAATTGGAATCTGTCCTTTTGGGATTCCGAAATATAG
TGTAGTACATACATCAGTTTACCTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3170#0      CATATCAAATATTATTCAATCCCAACATTAGGGGCTAGATGACAAGATATTGGTGATCGA 60
consensus_3170#1      -------------------------------------------GGGTAAGTGTTCATCGG 17
                                                                   *  * ** * **** 

consensus_3170#0      TTAGTACAGACTATTAACTCTCAACAAAATACAAAATGAAGTGGGGGGATTGGAATCTGT 120
consensus_3170#1      TT--TGGTAACAATCGCCACCAAACTAATTACATAGTTTTCTGAGGACACC----TATTC 71
                      **  *    ** **   * *  *** ** **** * *    ** **  *      * *  

consensus_3170#0      CCTTTTGGGATTCCGAAATATAGTGTAGTACATACATCAGCCCACCTTAGTTGTATTGAA 180
consensus_3170#1      CAACTCAGAATTTCTAATCACATACTTCTCTAC-CATCGATCATTCAAAAGAAGTCTGTA 130
                      *   *  * *** * **  * *   *  *  *  ****   *   *  *       ** *

consensus_3170#0      AATTTTGTTAACGTAAACTACCTAACATTTTGCAACACGTAAATTCGTACTACTAGT--G 238
consensus_3170#1      GTTACTGTTGGCACA--TTTAATAAGATCATATCAAATATTATTCAATCCCAACATTAGG 188
                        *  ****  *  *   *   *** **  *   * *  * * *   * * *  * *  *

consensus_3170#0      TCCCATATAAGTAGCAATCAGCCATC---TTGCAAATATCAGAAAGTGTGAAGGAAAAAT 295
consensus_3170#1      GGCTAGATGACAAGATATTGGTGATCGATTAGTACAGACAAAAAACTCTCAACAAAATAC 248
                        * * ** *  **  **  *  ***   * * * * *  * *** * * **  *** * 

consensus_3170#0      TAGATA----GGCATTAATGACAAACTTTCTTGGTCCAGACAACTGAACAATCAAATTAG 351
consensus_3170#1      AAAATGAAGTGATCTTAATTGGAATCTGTCCT--TTTGGGATTCCGAAATAT---AGTGT 303
                       * **     *   *****   ** ** ** *  *   *    * ***  **   * *  

consensus_3170#0      GTTGCAGAAATTTGGACATTTTGTAAGTC 380
consensus_3170#1      AGTACATACATCAGTTTACCTTA------ 326
                        * ** * **  *   *  **