These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3197#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [GTAAACTTTATCGCTCCTTCATTGCCATAACAATTATTCTCTGTTCCCGTTCTCATCTATTCGATCTTCCCAACCTTCTGCTACTAGGTATTCTACTTCTGATTGGTGCTACACACTACTTATACTTGTCCATATAAGTAGTCAATACCACAATGGTAGTATTAGTGTGATTGAAAACAGAGTTTTCCATCAAACTTTCCAATTATATTGACCACTAGTTAACCAATGCTGTGCATCATGTAAAAGCATTTGTTCTTCTGAATGTTTAATGGTATCACCGTCGATATTTTGCTTTTTCATTGAATCTGTAAGTAGATTAATCATTTCTTCATCTTGTGCTACATCGATTGGTAATTCTAGATCTACACTTAAAATGGAGAGACTTGCACCATTTTCAATTAGAAATCTGGCCAATTCACAGCAACCCACAGAAGCTGCTGCATGCAAAGGAGTCCAACCTTCGTGATCCTGTAGATTGATGTCTGCACCATTGCTGATAAGAAACTTTAGAAAATCAAAGTCGACATTGATACAAGCTAAGTGCGTGCTGGTCAATCCGTCGGCATTTTGCGTGTTAATGTCCGTTCCAAGCTTAAGTAAACGGGAAAACTCATCCAAATCACTGTTACTACATGCN] [+] EMBL CD161541 [GTAAACTTTATCGCTCCTTCATTGCCATAACAATTATTCTCTGTTCCCGTTCTCATCTATTCGATCTTCCCAACCTTCTGCTACTAGGTATTCTACTTCTGATTGGTGCTACACACTACTTATACTTGTCCATATAAGTAGTCAATACCACAATGGTAGTATTAGTGTGATTGAAAACAGAGTTTTCCATCAAACTTTCCAATTATATTGACCACTAGTTAACCAATGCTGTGCATCATGTAAAAGCATTTGTTCTTCTGAATGTTTAATGGTATCACCGTCGATATTTTGCTTTTTCATTGAATCTGTAAGTAGATTAATCATTTCTTCATCTTGTGCTACATCGATTGGTAATTCTAGATCTACACTTAAAATGGAGAGACTTGCACCATTTTCAATTAGAAATCTGGCCAATTCACAGCAACCCACAGAAGCTGCTGCATGCAAAGGAGTCCAACCTTCGTGATCCTGTAGATTGATGTCTGCACCATTGCTGATAAGAAACTTTAGAAAATCAAAGTCGACATTGATACAAGCTAAGTGCGTGCTGGTCAATCCGTCGGCATTTTGCGTGTTAATGTCCGTTCCAAGCTTAAGTAAACGGGAAAACTCATCCAAATCACTGTTACTACATGCN] consensusID : consensus_3197#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence [GGCACCAGTTCTAGGGTCAATAACTGGTTTATATTGACCACTAGTTAACCAATGCTGTGCATCATGTAAAAGCATTTGTTCTTCTGAATGTTTAATGGTATCACCGTCGATATTTTGCTTTTTCATTGAATCTGTAAGTAGATTAATCATTTCTTCATCTTGTGCTACATCGATTGGTAATTCTAGATCTACACTTAAAATGGAGAGACTTGCACCATTTTCAATTAGAAATCTGGCCAATTCACAGCAACCCACAGAAGCTGCTGCATGCAAAGGAGTCCAACCTTCGTGATCCTGTAGATTGATGTCTGCACCATTGCTGATAAGAAACTTTAGAAAATCAAAGTCGACATTGATACAAGCTAAGTGCGTGCTGGTCAATCCGTCGGCATTT] [-] EMBL CD116150 [GGCACCAGTTCTAGGGTCAATAACTGGTTTATATTGACCACTAGTTAACCAATGCTGTGCATCATGTAAAAGCATTTGTTCTTCTGAATGTTTAATGGTATCACCGTCGATATTTTGCTTTTTCATTGAATCTGTAAGTAGATTAATCATTTCTTCATCTTGTGCTACATCGATTGGTAATTCTAGATCTACACTTAAAATGGAGAGACTTGCACCATTTTCAATTAGAAATCTGGCCAATTCACAGCAACCCACAGAAGCTGCTGCATGCAAAGGAGTCCAACCTTCGTGATCCTGTAGATTGATGTCTGCACCATTGCTGATAAGAAACTTTAGAAAATCAAAGTCGACATTGATACAAGCTAAGTGCGTGCTGGTCAATCCGTCGGCATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3197#0 GTAAACTTTATCGCTCCTTCATTGCCATAACAATTATTCTCTGTTCCCGTTCTCATCTAT 60 consensus_3197#1 ------------------------------------------------------------ consensus_3197#0 TCGATCTTCCCAACCTTCTGCTACTAGGTATTCTACTTCTGATTGGTGCTACACACTACT 120 consensus_3197#1 ------------------------------------------------------------ consensus_3197#0 TATACTTGTCCATATAAGTAGTCAATACCACAATGGTAGTATTAGTGTGATTGAAAACAG 180 consensus_3197#1 ----------------------------------------------------GGCACCAG 8 * * *** consensus_3197#0 AGTTTTCCATCAAACTTTCCAATTATATTGACCACTAGTTAACCAATGCTGTGCATCATG 240 consensus_3197#1 --TTCTAGGGTCAATAACTGGTTTATATTGACCACTAGTTAACCAATGCTGTGCATCATG 66 ** * ** ************************************** consensus_3197#0 TAAAAGCATTTGTTCTTCTGAATGTTTAATGGTATCACCGTCGATATTTTGCTTTTTCAT 300 consensus_3197#1 TAAAAGCATTTGTTCTTCTGAATGTTTAATGGTATCACCGTCGATATTTTGCTTTTTCAT 126 ************************************************************ consensus_3197#0 TGAATCTGTAAGTAGATTAATCATTTCTTCATCTTGTGCTACATCGATTGGTAATTCTAG 360 consensus_3197#1 TGAATCTGTAAGTAGATTAATCATTTCTTCATCTTGTGCTACATCGATTGGTAATTCTAG 186 ************************************************************ consensus_3197#0 ATCTACACTTAAAATGGAGAGACTTGCACCATTTTCAATTAGAAATCTGGCCAATTCACA 420 consensus_3197#1 ATCTACACTTAAAATGGAGAGACTTGCACCATTTTCAATTAGAAATCTGGCCAATTCACA 246 ************************************************************ consensus_3197#0 GCAACCCACAGAAGCTGCTGCATGCAAAGGAGTCCAACCTTCGTGATCCTGTAGATTGAT 480 consensus_3197#1 GCAACCCACAGAAGCTGCTGCATGCAAAGGAGTCCAACCTTCGTGATCCTGTAGATTGAT 306 ************************************************************ consensus_3197#0 GTCTGCACCATTGCTGATAAGAAACTTTAGAAAATCAAAGTCGACATTGATACAAGCTAA 540 consensus_3197#1 GTCTGCACCATTGCTGATAAGAAACTTTAGAAAATCAAAGTCGACATTGATACAAGCTAA 366 ************************************************************ consensus_3197#0 GTGCGTGCTGGTCAATCCGTCGGCATTTTGCGTGTTAATGTCCGTTCCAAGCTTAAGTAA 600 consensus_3197#1 GTGCGTGCTGGTCAATCCGTCGGCATTT-------------------------------- 394 **************************** consensus_3197#0 ACGGGAAAACTCATCCAAATCACTGTTACTACATGCN 637 consensus_3197#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||