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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3206 cluster # 3206       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3206#0 length = 728 sequences # 1  
consensus_3206#1 length = 532 sequences # 1  

consensusID : consensus_3206#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 728
fasta sequence
                              [TCTACAGGATCTTTAGGCGGTTCGTATGGGTTTGTACCAGTAGCCAATTCATAAATGCCTAGGCACGCTCTGGAGCAAGGTAACGCCATGATCCAACATCCGATAAAATTTCACAGTTGGAAAGAGTGACGGCAGTACCAAAGACTCCTAATTTTATTTGTCCACTTTTATTAGCTAACATGTTAGCCGGCTTTATATCACGATGAATCATATTCATATCGAATCGTAAATAATATAATGCTGAAACGATTGAAAATGTTATATGCTTTAAAACATTTTCAGGAATGTATTCATTAACTGCCTTTACTTTATTTAGAAGTACATCTAAAGAGATATCCATAAGTTCTAATAAAATCCAAACAGAATCTACATGAGTGAAAGCGCACTAAGATCGTAATAAAAATGGATGTGGATGTAATTTTCCTATTTCCAAATAAAATGGTATCTTTTTAACTGCAGATGATTCTTTTGCTGATTATAAACGCATCTTGGAAACTTGTCCAAAAAAACCTTCACCAAGAATACATGATCCTTTCGAAATCATCACCTGTAAACAGTATGGGGGTATCGTTAATATCCAAGAATGCACTAACTTCAGCTTTTGCTCATTAGGAANGGCAANGAAACCCGATGTCTATGGACTGGTCCGACNTATGCAGTTATTCTATTTAAACTATAGAAAAGTACTGAACACATGCAAGCACACACGATACCGCTTTATACAATCA]

[+] EMBL CD190199             [TCTACAGGATCTTTAGGCGGTTCGTATGGGTTTGTACCAGTAGCCAATTCATAAATGCCTAGGCACGCTCTGGAGCAAGGTAACGCCATGATCCAACATCCGATAAAATTTCACAGTTGGAAAGAGTGACGGCAGTACCAAAGACTCCTAATTTTATTTGTCCACTTTTATTAGCTAACATGTTAGCCGGCTTTATATCACGATGAATCATATTCATATCGAATCGTAAATAATATAATGCTGAAACGATTGAAAATGTTATATGCTTTAAAACATTTTCAGGAATGTATTCATTAACTGCCTTTACTTTATTTAGAAGTACATCTAAAGAGATATCCATAAGTTCTAATAAAATCCAAACAGAATCTACATGAGTGAAAGCGCACTAAGATCGTAATAAAAATGGATGTGGATGTAATTTTCCTATTTCCAAATAAAATGGTATCTTTTTAACTGCAGATGATTCTTTTGCTGATTATAAACGCATCTTGGAAACTTGTCCAAAAAAACCTTCACCAAGAATACATGATCCTTTCGAAATCATCACCTGTAAACAGTATGGGGGTATCGTTAATATCCAAGAATGCACTAACTTCAGCTTTTGCTCATTAGGAANGGCAANGAAACCCGATGTCTATGGACTGGTCCGACNTATGCAGTTATTCTATTTAAACTATAGAAAAGTACTGAACACATGCAAGCACACACGATACCGCTTTATACAATCA]


>consensus_3206#0 TCTACAGGATCTTTAGGCGGTTCGTATGGGTTTGTACCAGTAGCCAATTCATAAATGCCT AGGCACGCTCTGGAGCAAGGTAACGCCATGATCCAACATCCGATAAAATTTCACAGTTGG AAAGAGTGACGGCAGTACCAAAGACTCCTAATTTTATTTGTCCACTTTTATTAGCTAACA TGTTAGCCGGCTTTATATCACGATGAATCATATTCATATCGAATCGTAAATAATATAATG CTGAAACGATTGAAAATGTTATATGCTTTAAAACATTTTCAGGAATGTATTCATTAACTG CCTTTACTTTATTTAGAAGTACATCTAAAGAGATATCCATAAGTTCTAATAAAATCCAAA CAGAATCTACATGAGTGAAAGCGCACTAAGATCGTAATAAAAATGGATGTGGATGTAATT TTCCTATTTCCAAATAAAATGGTATCTTTTTAACTGCAGATGATTCTTTTGCTGATTATA AACGCATCTTGGAAACTTGTCCAAAAAAACCTTCACCAAGAATACATGATCCTTTCGAAA TCATCACCTGTAAACAGTATGGGGGTATCGTTAATATCCAAGAATGCACTAACTTCAGCT TTTGCTCATTAGGAANGGCAANGAAACCCGATGTCTATGGACTGGTCCGACNTATGCAGT TATTCTATTTAAACTATAGAAAAGTACTGAACACATGCAAGCACACACGATACCGCTTTA TACAATCA



consensusID : consensus_3206#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 532
fasta sequence
                              [GTTATATGCTTTAAACATTTTCAGGAATGTATTCATTAACTGCCTTTACTTTATTTAGAAGTACATCTAAAGAGATATCCATAAGTTCTAATAAAATCCAAACAGAATCTACATGAGTGAAAGCACAATAAGATCGTAATAAAAATGGATGTGGATGCAATTTTCCTATTTCCAAATCTGCTATCATATCTGGATTACGTGGGTCCAAATTACAAAATGGTATTTTTTTAACTGCAAATGATTCTTTTGTTGATTTTAAACGCATCTTGGAAACTTGTCCAAAAAAACCTTCACCAAGAATACATGTATCCTCGAAATCATCACCTGTAACAGTTATGGGGGTATCGTTAATATCCAAGATTGCACTTGTAGATAAATTGGGAACAGGAGTTAGGTGACAACGAGGAGAAGTGACTCTACCTAACTTCAGCTTTTGCTCATTAGGAAGGGCGAGAAACCGATGTCTTATGGACTGTTCCGACATATGCAGTTATTCTATTTAAACTATAGAAAAGGTACTGAACACTGCCCA]

[-] EMBL CD069613             [GTTATATGCTTTAAACATTTTCAGGAATGTATTCATTAACTGCCTTTACTTTATTTAGAAGTACATCTAAAGAGATATCCATAAGTTCTAATAAAATCCAAACAGAATCTACATGAGTGAAAGCACAATAAGATCGTAATAAAAATGGATGTGGATGCAATTTTCCTATTTCCAAATCTGCTATCATATCTGGATTACGTGGGTCCAAATTACAAAATGGTATTTTTTTAACTGCAAATGATTCTTTTGTTGATTTTAAACGCATCTTGGAAACTTGTCCAAAAAAACCTTCACCAAGAATACATGTATCCTCGAAATCATCACCTGTAACAGTTATGGGGGTATCGTTAATATCCAAGATTGCACTTGTAGATAAATTGGGAACAGGAGTTAGGTGACAACGAGGAGAAGTGACTCTACCTAACTTCAGCTTTTGCTCATTAGGAAGGGCGAGAAACCGATGTCTTATGGACTGTTCCGACATATGCAGTTATTCTATTTAAACTATAGAAAAGGTACTGAACACTGCCCA]


>consensus_3206#1 GTTATATGCTTTAAACATTTTCAGGAATGTATTCATTAACTGCCTTTACTTTATTTAGAA GTACATCTAAAGAGATATCCATAAGTTCTAATAAAATCCAAACAGAATCTACATGAGTGA AAGCACAATAAGATCGTAATAAAAATGGATGTGGATGCAATTTTCCTATTTCCAAATCTG CTATCATATCTGGATTACGTGGGTCCAAATTACAAAATGGTATTTTTTTAACTGCAAATG ATTCTTTTGTTGATTTTAAACGCATCTTGGAAACTTGTCCAAAAAAACCTTCACCAAGAA TACATGTATCCTCGAAATCATCACCTGTAACAGTTATGGGGGTATCGTTAATATCCAAGA TTGCACTTGTAGATAAATTGGGAACAGGAGTTAGGTGACAACGAGGAGAAGTGACTCTAC CTAACTTCAGCTTTTGCTCATTAGGAAGGGCGAGAAACCGATGTCTTATGGACTGTTCCG ACATATGCAGTTATTCTATTTAAACTATAGAAAAGGTACTGAACACTGCCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3206#0      TCTACAGGATCTTTAGGCGGTTCGTATGGGTTTGTACCAGTAGCCAATTCATAAATGCCT 60
consensus_3206#1      ------------------------------------------------------------
                                                                                  

consensus_3206#0      AGGCACGCTCTGGAGCAAGGTAACGCCATGATCCAACATCCGATAAAATTTCACAGTTGG 120
consensus_3206#1      ------------------------------------------------------------
                                                                                  

consensus_3206#0      AAAGAGTGACGGCAGTACCAAAGACTCCTAATTTTATTTGTCCACTTTTATTAGCTAACA 180
consensus_3206#1      ------------------------------------------------------------
                                                                                  

consensus_3206#0      TGTTAGCCGGCTTTATATCACGATGAATCATATTCATATCGAATCGTAAATAATATAATG 240
consensus_3206#1      ------------------------------------------------------------
                                                                                  

consensus_3206#0      CTGAAACGATTGAAAATGTTATATGCTTTAAAACATTTTCAGGAATGTATTCATTAACTG 300
consensus_3206#1      -----------------GTTATATGCTTTAAA-CATTTTCAGGAATGTATTCATTAACTG 42
                                       *************** ***************************

consensus_3206#0      CCTTTACTTTATTTAGAAGTACATCTAAAGAGATATCCATAAGTTCTAATAAAATCCAAA 360
consensus_3206#1      CCTTTACTTTATTTAGAAGTACATCTAAAGAGATATCCATAAGTTCTAATAAAATCCAAA 102
                      ************************************************************

consensus_3206#0      CAGAATCTACATGAGTGAAAGCGCACTAAGATCGTAATAAAAATGGATGTGGATGTAATT 420
consensus_3206#1      CAGAATCTACATGAGTGAAAGCACAATAAGATCGTAATAAAAATGGATGTGGATGCAATT 162
                      ********************** ** ***************************** ****

consensus_3206#0      TTCCTATTTCCAAAT------------------------------------AAAATGGTA 444
consensus_3206#1      TTCCTATTTCCAAATCTGCTATCATATCTGGATTACGTGGGTCCAAATTACAAAATGGTA 222
                      ***************                                    *********

consensus_3206#0      TCTTTTTAACTGCAGATGATTCTTTTGCTGATTATAAACGCATCTTGGAAACTTGTCCAA 504
consensus_3206#1      TTTTTTTAACTGCAAATGATTCTTTTGTTGATTTTAAACGCATCTTGGAAACTTGTCCAA 282
                      * ************ ************ ***** **************************

consensus_3206#0      AAAAACCTTCACCAAGAATACATGATCCTTTCGAAATCATCACCTGTAAACAGTATGGGG 564
consensus_3206#1      AAAAACCTTCACCAAGAATACATG-TATCCTCGAAATCATCACCTGTAACAGTTATGGGG 341
                      ************************ *    *******************    *******

consensus_3206#0      GTATCGTTAATATCCAAGAATGCACT---------------------------------- 590
consensus_3206#1      GTATCGTTAATATCCAAGATTGCACTTGTAGATAAATTGGGAACAGGAGTTAGGTGACAA 401
                      ******************* ******                                  

consensus_3206#0      ---------------------AACTTCAGCTTTTGCTCATTAGGAANGGCAANGAAACCC 629
consensus_3206#1      CGAGGAGAAGTGACTCTACCTAACTTCAGCTTTTGCTCATTAGGAAGGGCGAGAAA--CC 459
                                           ************************* *** *  **  **

consensus_3206#0      GATGTCT-ATGGACTGGTCCGACNTATGCAGTTATTCTATTTAAACTATAGAAAAG-TAC 687
consensus_3206#1      GATGTCTTATGGACTGTTCCGACATATGCAGTTATTCTATTTAAACTATAGAAAAGGTAC 519
                      ******* ******** ****** ******************************** ***

consensus_3206#0      TGAACACATGCAAGCACACACGATACCGCTTTATACAATCA 728
consensus_3206#1      TGAACACTGCCCA---------------------------- 532
                      *******   * *                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)