cluster # 3208

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Schistosoma mansoni
cluster # 3208 cluster # 3208 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3208#0 length = 538 sequences # 1

consensus_3208#1 length = 251 sequences # 1

consensusID : consensus_3208#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 538
fasta sequence

                              [ATATCAGTCTATTACTGCTCCACACAATCGTTTTTCTTAAACTTTCTACGTTTGTTTCGAAAAATATTTGTTTTCTGCAATAATTATAATTTTTCTTGTTCTGTTTTCATTACTCACCACCATGTTATTGCTCTGCTTACAATTAATTTAATTTATTGTTTATTTAGAATGGAAGTGTTATTAGGTAAAAATGAAATCATTGTCAAGCATATATAACGTTATCTTTCAGATTAAGTGGTTTTTATCTGATTATTTGGTTACATTATGACCTGAAAGGAGTGTAATCGTTTCTCTGTCATCATATATACACACTCACATTTCATATTTCCCTGTTTAACTGAGGAACATTTCAGTATTGTCTCTCACCGGTGCTGTCATGCTATATTATATTATATCCTGGAAATTTTTATTATCGAAAACCTACTATATGTTGATTGCATGTAATTACTTCTTCTAACTCATCAAGCTGTGTTGATACATATCTTCTCGCTTTTTTTCCACTTCTAATTCAATTTGGGATATTACTAGATTTTACTTC]

[+] EMBL CD069628             [ATATCAGTCTATTACTGCTCCACACAATCGTTTTTCTTAAACTTTCTACGTTTGTTTCGAAAAATATTTGTTTTCTGCAATAATTATAATTTTTCTTGTTCTGTTTTCATTACTCACCACCATGTTATTGCTCTGCTTACAATTAATTTAATTTATTGTTTATTTAGAATGGAAGTGTTATTAGGTAAAAATGAAATCATTGTCAAGCATATATAACGTTATCTTTCAGATTAAGTGGTTTTTATCTGATTATTTGGTTACATTATGACCTGAAAGGAGTGTAATCGTTTCTCTGTCATCATATATACACACTCACATTTCATATTTCCCTGTTTAACTGAGGAACATTTCAGTATTGTCTCTCACCGGTGCTGTCATGCTATATTATATTATATCCTGGAAATTTTTATTATCGAAAACCTACTATATGTTGATTGCATGTAATTACTTCTTCTAACTCATCAAGCTGTGTTGATACATATCTTCTCGCTTTTTTTCCACTTCTAATTCAATTTGGGATATTACTAGATTTTACTTC]




>consensus_3208#0
ATATCAGTCTATTACTGCTCCACACAATCGTTTTTCTTAAACTTTCTACGTTTGTTTCGA
AAAATATTTGTTTTCTGCAATAATTATAATTTTTCTTGTTCTGTTTTCATTACTCACCAC
CATGTTATTGCTCTGCTTACAATTAATTTAATTTATTGTTTATTTAGAATGGAAGTGTTA
TTAGGTAAAAATGAAATCATTGTCAAGCATATATAACGTTATCTTTCAGATTAAGTGGTT
TTTATCTGATTATTTGGTTACATTATGACCTGAAAGGAGTGTAATCGTTTCTCTGTCATC
ATATATACACACTCACATTTCATATTTCCCTGTTTAACTGAGGAACATTTCAGTATTGTC
TCTCACCGGTGCTGTCATGCTATATTATATTATATCCTGGAAATTTTTATTATCGAAAAC
CTACTATATGTTGATTGCATGTAATTACTTCTTCTAACTCATCAAGCTGTGTTGATACAT
ATCTTCTCGCTTTTTTTCCACTTCTAATTCAATTTGGGATATTACTAGATTTTACTTC

consensusID : consensus_3208#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [AAGAATCGGCACGAGGTTTTCTCGCTTTTTTTCCACTTCTAATTCAATTTGGGATATTAATAGATTTTACTTCCATAAATCAAAGCACTTATCGTACTCTACATTTCGCCACGACTTTCGTCCACAATTCCTCTAATTCTAATCTTTGATAGTAACGCTATTTCCACTGCGGCCTGTGACTGCTGTTCACAATGTTCATACCAATCCAATTAGCATTATTACTCAATGGTATCACTAGCTAGTTGTAAAAC]

[+] EMBL CD083310             [AAGAATCGGCACGAGGTTTTCTCGCTTTTTTTCCACTTCTAATTCAATTTGGGATATTAATAGATTTTACTTCCATAAATCAAAGCACTTATCGTACTCTACATTTCGCCACGACTTTCGTCCACAATTCCTCTAATTCTAATCTTTGATAGTAACGCTATTTCCACTGCGGCCTGTGACTGCTGTTCACAATGTTCATACCAATCCAATTAGCATTATTACTCAATGGTATCACTAGCTAGTTGTAAAAC]




>consensus_3208#1
AAGAATCGGCACGAGGTTTTCTCGCTTTTTTTCCACTTCTAATTCAATTTGGGATATTAA
TAGATTTTACTTCCATAAATCAAAGCACTTATCGTACTCTACATTTCGCCACGACTTTCG
TCCACAATTCCTCTAATTCTAATCTTTGATAGTAACGCTATTTCCACTGCGGCCTGTGAC
TGCTGTTCACAATGTTCATACCAATCCAATTAGCATTATTACTCAATGGTATCACTAGCT
AGTTGTAAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3208#0      ATATCAGTCTATTACTGCTCCACACAATCGTTTTTCTTAAACTTTCTACGTTTGTTTCGA 60
consensus_3208#1      ------AAGAATCGGCACGAGGTTTTCTCGCTTTTTTTCCACTT-CTAATTCAATTTGGG 53
                                **     *         *** **** **  **** ***  *   *** * 

consensus_3208#0      AAAATATTTGTTTTC---TGCAATAATTATAATTTTTCTTGTTCTGTTTTCATTACTCAC 117
consensus_3208#1      ATATTAATAGATTTTACTTCCATAAATCAAAGCACTTATCGTACT--CTACATT--TCGC 109
                      * * ** * * ***    * **  *** * *    ** * ** **   * ****  ** *

consensus_3208#0      CACCATGTTATTGCTCTGCTTACAATTAATTTAATTTATTGTTTATTTAGAATGGAAGTG 177
consensus_3208#1      CACGACTTT-------CGTCCACAATTCCTCTAATT-----CTAATCTTTGATAGTAACG 157
                      *** *  **        *   ******  * *****      * ** *   ** * *  *

consensus_3208#0      TTATTAGGTAAAAATGAAATCATTGTCAAGCATATATAACGTTATCTTTCAGATTAAGTG 237
consensus_3208#1      CTATTTC----CACTGCGGCCTGTGACTGCTGTTCACAATGTT-CATACCAATCCAATTA 212
                       ****       * **    *  ** *     *  * ** ***   *  **    ** * 

consensus_3208#0      GTTTTTATCTGATTATTTGGTTACATTATGACCTGAAAGGAGTGTAATCGTTTCTCTGTC 297
consensus_3208#1      GCATT------ATTACTCAATGGTATCACTAGCTAGTTGTAAAAC--------------- 251
                      *  **      **** *   *   ** *  * **    * *                   

consensus_3208#0      ATCATATATACACACTCACATTTCATATTTCCCTGTTTAACTGAGGAACATTTCAGTATT 357
consensus_3208#1      ------------------------------------------------------------
                                                                                  

consensus_3208#0      GTCTCTCACCGGTGCTGTCATGCTATATTATATTATATCCTGGAAATTTTTATTATCGAA 417
consensus_3208#1      ------------------------------------------------------------
                                                                                  

consensus_3208#0      AACCTACTATATGTTGATTGCATGTAATTACTTCTTCTAACTCATCAAGCTGTGTTGATA 477
consensus_3208#1      ------------------------------------------------------------
                                                                                  

consensus_3208#0      CATATCTTCTCGCTTTTTTTCCACTTCTAATTCAATTTGGGATATTACTAGATTTTACTT 537
consensus_3208#1      ------------------------------------------------------------
                                                                                  

consensus_3208#0      C 538
consensus_3208#1      -