These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [TGATATGGGCTTTGAAGAAGAAGTTCGAACTATATTTTCCTATTTTAAGGGACAACGTCAAACACTTTGTTCTCTGCTACTATGCCAAAGAAAATACAAAATTTCGCCAAATCAGCCTTGGTAAAACCTGTCACTGTTAATGTTGGCCGAGCTGGAGCGGCTAGTATGAATGTCACTCAAGAAGTGGAATATGTAAAACATGAAGCGAAAATTCCTCATTTACTTAGTGCTTTACAGAAAACTCCACCTCCTGTGTTGAAGCAGTTAGTATTCATGGTGGAAAAGATCAAGATGAACGTGTATCAGCTGTTACAGAATTTAGAGCTCATCATCGTGATGTCTTAGTTGCTACAGATGTGGCTAGTAAAGGTTTGGATTTTCCAGAAATTAATCACGTAATCAACTACGATATGCCTGAGGATATTGAAAATTATGTACATCGCATCGGTCGTACTGGTCGTGGTCATCAACGTGGTTTAACCACA] [+] EMBL CD069671 [TGATATGGGCTTTGAAGAAGAAGTTCGAACTATATTTTCCTATTTTAAGGGACAACGTCAAACACTTTGTTCTCTGCTACTATGCCAAAGAAAATACAAAATTTCGCCAAATCAGCCTTGGTAAAACCTGTCACTGTTAATGTTGGCCGAGCTGGAGCGGCTAGTATGAATGTCACTCAAGAAGTGGAATATGTAAAACATGAAGCGAAAATTCCTCATTTACTTAGTGCTTTACAGAAAACTCCACCTCCTGTGTTGAAGCAGTTAGTATTCATGGTGGAAAAGATCAAGATGAACGTGTATCAGCTGTTACAGAATTTAGAGCTCATCATCGTGATGTCTTAGTTGCTACAGATGTGGCTAGTAAAGGTTTGGATTTTCCAGAAATTAATCACGTAATCAACTACGATATGCCTGAGGATATTGAAAATTATGTACATCGCATCGGTCGTACTGGTCGTGGTCATCAACGTGGTTTAACCACA] consensusID : consensus_3219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [TTGATTGATATGGGTTTTGAAGAAGAAGTTCGAACTATATTTTCCTATTTTAGGGGACAACGTCAAACACTTTTGTTCTCTGCTACTATGCCAAAGAAAATACAAAATTTCGCCAAATCAGCCTTGGTAAAACCTGTCACTGTTAATGTTGGCCGAGCTGGAGCGGCTAGTATGAATGTCACTCAAGAAGTGGAATATGTAAAACATGAAGCGAAAATTCCTCATTTACTTAGTGCTTTACAGAAAACTCCACCTCCTGTTATTATATTTGCTGAGCGTAAACAAGATGTGGATGCTATACATGAATATCTTCTTTTGAAAGGTGTTGAGCAGTTAGTATTCATGGTGGAAAAGATCAAGA] [+] EMBL CD181525 [TTGATTGATATGGGTTTTGAAGAAGAAGTTCGAACTATATTTTCCTATTTTAGGGGACAACGTCAAACACTTTTGTTCTCTGCTACTATGCCAAAGAAAATACAAAATTTCGCCAAATCAGCCTTGGTAAAACCTGTCACTGTTAATGTTGGCCGAGCTGGAGCGGCTAGTATGAATGTCACTCAAGAAGTGGAATATGTAAAACATGAAGCGAAAATTCCTCATTTACTTAGTGCTTTACAGAAAACTCCACCTCCTGTTATTATATTTGCTGAGCGTAAACAAGATGTGGATGCTATACATGAATATCTTCTTTTGAAAGGTGTTGAGCAGTTAGTATTCATGGTGGAAAAGATCAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3219#0 -----TGATATGGGCTTTGAAGAAGAAGTTCGAACTATATTTTCCTATTTTAAGGGACAA 55 consensus_3219#1 TTGATTGATATGGGTTTTGAAGAAGAAGTTCGAACTATATTTTCCTATTTTAGGGGACAA 60 ********* ************************************* ******* consensus_3219#0 CGTCAAACACTTT-GTTCTCTGCTACTATGCCAAAGAAAATACAAAATTTCGCCAAATCA 114 consensus_3219#1 CGTCAAACACTTTTGTTCTCTGCTACTATGCCAAAGAAAATACAAAATTTCGCCAAATCA 120 ************* ********************************************** consensus_3219#0 GCCTTGGTAAAACCTGTCACTGTTAATGTTGGCCGAGCTGGAGCGGCTAGTATGAATGTC 174 consensus_3219#1 GCCTTGGTAAAACCTGTCACTGTTAATGTTGGCCGAGCTGGAGCGGCTAGTATGAATGTC 180 ************************************************************ consensus_3219#0 ACTCAAGAAGTGGAATATGTAAAACATGAAGCGAAAATTCCTCATTTACTTAGTGCTTTA 234 consensus_3219#1 ACTCAAGAAGTGGAATATGTAAAACATGAAGCGAAAATTCCTCATTTACTTAGTGCTTTA 240 ************************************************************ consensus_3219#0 CAGAAAACTCCACCTCCTGTGTTGAAGCAGTTAGTATTCATGGTGGAAAAGATCAAGATG 294 consensus_3219#1 CAGAAAACTCCACCTCCTGTTATTATATTTGCTGAGCGTAAACAAGATGTGGATGCTATA 300 ******************** * * * * ** * ** consensus_3219#0 AACGTGTATCAGCTGTTACAGAATTTAGAGCTCATCATCGTGATGTCTTAGTTGCTACAG 354 consensus_3219#1 CATGAATATCTTCTTTTGAAAGGTGTTGAGCAGTTAGTATTCATGGTGGAAAAGATCAAG 360 * * **** ** ** * * * **** * * * *** * * * ** consensus_3219#0 ATGTGGCTAGTAAAGGTTTGGATTTTCCAGAAATTAATCACGTAATCAACTACGATATGC 414 consensus_3219#1 A----------------------------------------------------------- 361 * consensus_3219#0 CTGAGGATATTGAAAATTATGTACATCGCATCGGTCGTACTGGTCGTGGTCATCAACGTG 474 consensus_3219#1 ------------------------------------------------------------ consensus_3219#0 GTTTAACCACA 485 consensus_3219#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||