These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_322#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 190 fasta sequence [ACCGAGTATGCCTGAAATGAGTGATTCGCATAGCAGAAGCTGTAATTAGTGTTCTGGACTCAATTGGAAGGGCTCGGCGAACAATCAACCAAAAAGGACGCTAGACTGCTCATACTGGTTGAACGTCATTGATTTGGTACAGTGTTAAGATTAGAAAGGTCGTATTTCGATTGGTGGATAATTCACATGA] [+] EMBL CD182925 [ACCGAGTATGCCTGAAATGAGTGATTCGCATAGCAGAAGCTGTAATTAGTGTTCTGGACTCAATTGGAAGGGCTCGGCGAACAATCAACCAAAAAGGACGCTAGACTGCTCATACTGGTTGAACGTCATTGATTTGGTACAGTGTTAAGATTAGAAAGGTCGTATTTCGATTGGTGGATAATTCACATGA] consensusID : consensus_322#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 179 fasta sequence [ACCGAGTATGCTTCAACTAAATGATTCGCATAGCAGAAGCTGTAATTGGTGTTCTGGACTCAATTGGAAGGGTCAGGCAGACAAGGGACCAATAAGGACGCTAGACTACTCATACTGGTCGAACGTCATTGATTTGGCACAGTGTTAAGATAGGAAAAGTCGTATTTCGATTGATGGAT] [-] EMBL CD190015 [ACCGAGTATGCTTCAACTAAATGATTCGCATAGCAGAAGCTGTAATTGGTGTTCTGGACTCAATTGGAAGGGTCAGGCAGACAAGGGACCAATAAGGACGCTAGACTACTCATACTGGTCGAACGTCATTGATTTGGCACAGTGTTAAGATAGGAAAAGTCGTATTTCGATTGATGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_322#0 ACCGAGTATGCCTGAAATGAGTGATTCGCATAGCAGAAGCTGTAATTAGTGTTCTGGACT 60 consensus_322#1 ACCGAGTATGCTTCAACTAAATGATTCGCATAGCAGAAGCTGTAATTGGTGTTCTGGACT 60 *********** * ** * * ************************** ************ consensus_322#0 CAATTGGAAGGGCTCGGCGAACAATCAACCAAAAAGGACGCTAGACTGCTCATACTGGTT 120 consensus_322#1 CAATTGGAAGGGTCAGGCAGACAAGGGACCAATAAGGACGCTAGACTACTCATACTGGTC 120 ************ *** **** ***** ************** *********** consensus_322#0 GAACGTCATTGATTTGGTACAGTGTTAAGATTAGAAAGGTCGTATTTCGATTGGTGGATA 180 consensus_322#1 GAACGTCATTGATTTGGCACAGTGTTAAGATAGGAAAAGTCGTATTTCGATTGATGGAT- 179 ***************** ************* **** *************** ***** consensus_322#0 ATTCACATGA 190 consensus_322#1 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||