These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3224#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence [TGACCGTATCGCAATCATGTCTGGCGGTGAACTCAAGTGTTGTGGATCACCATTGTTCTTGAAAGCAAAATACGGTGCCGGTTACTTACTGTCTATCGTTAAACAATCCAGTTGTTCATCTGAATATGTATTAAAGCAAGTTAAACATCACATCCCTAATGCATTTACACGCAGCGATTATGGTGAAGAAATTCGCATACTACTACCACTAGAATCAATTGATAAATTTGGAAATTTATTCGAGGATCTGGAGTCAAATAAAATTAGTTTGGGCATTTCAAGTTTCGGTGTATCTGTCACAACAATGGAAGAAGTATTCTTTCAGTATGTGGTTTTACTTGTATCTTATTGTTACTGTTTCTAACATTGACAACCATTCCCAATAATAAGAAACAAATAAATTCCTTGTTAACCTGAACTATTATAATTGTTATTATGTATGACCACCGAGAACCGAA] [+] EMBL CD069690 [TGACCGTATCGCAATCATGTCTGGCGGTGAACTCAAGTGTTGTGGATCACCATTGTTCTTGAAAGCAAAATACGGTGCCGGTTACTTACTGTCTATCGTTAAACAATCCAGTTGTTCATCTGAATATGTATTAAAGCAAGTTAAACATCACATCCCTAATGCATTTACACGCAGCGATTATGGTGAAGAAATTCGCATACTACTACCACTAGAATCAATTGATAAATTTGGAAATTTATTCGAGGATCTGGAGTCAAATAAAATTAGTTTGGGCATTTCAAGTTTCGGTGTATCTGTCACAACAATGGAAGAAGTATTCTTTCAGTATGTGGTTTTACTTGTATCTTATTGTTACTGTTTCTAACATTGACAACCATTCCCAATAATAAGAAACAAATAAATTCCTTGTTAACCTGAACTATTATAATTGTTATTATGTATGACCACCGAGAACCGAA] consensusID : consensus_3224#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [GTCAAGAGGAAACAATCCTAGTTACTACACACTACATGGATGAAGCTGACCATTTGGGTGACCGTATCGCAATCATGTCTGGCGGTGAACTCAAGTGTTGTGGATCACCACTGTTCTTGAAAGCAAAATACGGTGCCGGTTACTTACTGTCTATCGTTAAACAATCCAGTTGTTCATCTGAATATGTATTAAAACAAGTTAAACATCACATCCCTAATGCATTTACACGCAGCGATTATGGTGAAGAAATTCGCATACTACTACCACTAGAATCAATTGATAAATTTGGAAATTTATTCGAGGATCTGGAGTCAAATAAAATTAGTTTGGGCATTTCAAGTTTTGGTGTATCTGTCACAACAATGGAAGAAGTATTCTTTCAAGTTAGTAAGCAGACAAATATAGTCAGCTGTCGCAATCGTG] [+] EMBL CD124418 [GTCAAGAGGAAACAATCCTAGTTACTACACACTACATGGATGAAGCTGACCATTTGGGTGACCGTATCGCAATCATGTCTGGCGGTGAACTCAAGTGTTGTGGATCACCACTGTTCTTGAAAGCAAAATACGGTGCCGGTTACTTACTGTCTATCGTTAAACAATCCAGTTGTTCATCTGAATATGTATTAAAACAAGTTAAACATCACATCCCTAATGCATTTACACGCAGCGATTATGGTGAAGAAATTCGCATACTACTACCACTAGAATCAATTGATAAATTTGGAAATTTATTCGAGGATCTGGAGTCAAATAAAATTAGTTTGGGCATTTCAAGTTTTGGTGTATCTGTCACAACAATGGAAGAAGTATTCTTTCAAGTTAGTAAGCAGACAAATATAGTCAGCTGTCGCAATCGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3224#0 ----------------------------------------------------------TG 2 consensus_3224#1 GTCAAGAGGAAACAATCCTAGTTACTACACACTACATGGATGAAGCTGACCATTTGGGTG 60 ** consensus_3224#0 ACCGTATCGCAATCATGTCTGGCGGTGAACTCAAGTGTTGTGGATCACCATTGTTCTTGA 62 consensus_3224#1 ACCGTATCGCAATCATGTCTGGCGGTGAACTCAAGTGTTGTGGATCACCACTGTTCTTGA 120 ************************************************** ********* consensus_3224#0 AAGCAAAATACGGTGCCGGTTACTTACTGTCTATCGTTAAACAATCCAGTTGTTCATCTG 122 consensus_3224#1 AAGCAAAATACGGTGCCGGTTACTTACTGTCTATCGTTAAACAATCCAGTTGTTCATCTG 180 ************************************************************ consensus_3224#0 AATATGTATTAAAGCAAGTTAAACATCACATCCCTAATGCATTTACACGCAGCGATTATG 182 consensus_3224#1 AATATGTATTAAAACAAGTTAAACATCACATCCCTAATGCATTTACACGCAGCGATTATG 240 ************* ********************************************** consensus_3224#0 GTGAAGAAATTCGCATACTACTACCACTAGAATCAATTGATAAATTTGGAAATTTATTCG 242 consensus_3224#1 GTGAAGAAATTCGCATACTACTACCACTAGAATCAATTGATAAATTTGGAAATTTATTCG 300 ************************************************************ consensus_3224#0 AGGATCTGGAGTCAAATAAAATTAGTTTGGGCATTTCAAGTTTCGGTGTATCTGTCACAA 302 consensus_3224#1 AGGATCTGGAGTCAAATAAAATTAGTTTGGGCATTTCAAGTTTTGGTGTATCTGTCACAA 360 ******************************************* **************** consensus_3224#0 CAATGGAAGAAGTATTCTTTCA-GTATGTGGTTTTACTTGTATCTTATTGTTACTGTTTC 361 consensus_3224#1 CAATGGAAGAAGTATTCTTTCAAGTTAGTAAGCAGACAAATATAGT----CAGCTGTCGC 416 ********************** ** ** ** *** * **** * consensus_3224#0 TAACATTGACAACCATTCCCAATAATAAGAAACAAATAAATTCCTTGTTAACCTGAACTA 421 consensus_3224#1 AATCGTG----------------------------------------------------- 423 * * * consensus_3224#0 TTATAATTGTTATTATGTATGACCACCGAGAACCGAA 458 consensus_3224#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||