These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3236#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence [CAAAGAGTATCATACCAGAACGGAATAGCTTTTTAGTGCTCTCTGGTTTTTAATGGCACCCCAAATGACGATCAATCTGTGATGAATACAACTTGGAAAATAAACTAATCTCCACAAAATCCATTCAACTAAAGAACTTATTTGTAAAAATAAAATGTTAAAATTGTTTGTAAAAATAACTTACAACAAGTGCGCGAATTCTAGTACCATCATTTTCACTTTTGTATAATGATTGTAATAAAGGAACAGCTTTAGAAATTATACTTAAACATTGTTGTTTCTTATGTGTGGCAA] [+] EMBL CD116761 [CAAAGAGTATCATACCAGAACGGAATAGCTTTTTAGTGCTCTCTGGTTTTTAATGGCACCCCAAATGACGATCAATCTGTGATGAATACAACTTGGAAAATAAACTAATCTCCACAAAATCCATTCAACTAAAGAACTTATTTGTAAAAATAAAATGTTAAAATTGTTTGTAAAAATAACTTACAACAAGTGCGCGAATTCTAGTACCATCATTTTCACTTTTGTATAATGATTGTAATAAAGGAACAGCTTTAGAAATTATACTTAAACATTGTTGTTTCTTATGTGTGGCAA] consensusID : consensus_3236#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence [CACCAAGTTTACATAAAGCAACAAGTGCGCGAATTCTAGTACCATCATTTTCACTTTTGTATAATGATTGTAATAAAGGAACAGCTTTAGAAATTATACTTAAACATTGTTGTTTCTTATGTGTAGCAATTACAATTGTATCTAATGCAATTGTCTGATAAAGTTTATTCTCGCATTGTGTAAGAAGTAATAGACCATCGAAAACCCCTTCTTGAGAAATTATTCCTGA] [-] EMBL CD130780 [CACCAAGTTTACATAAAGCAACAAGTGCGCGAATTCTAGTACCATCATTTTCACTTTTGTATAATGATTGTAATAAAGGAACAGCTTTAGAAATTATACTTAAACATTGTTGTTTCTTATGTGTAGCAATTACAATTGTATCTAATGCAATTGTCTGATAAAGTTTATTCTCGCATTGTGTAAGAAGTAATAGACCATCGAAAACCCCTTCTTGAGAAATTATTCCTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3236#0 CAAAGAGTATCATACCAGAACGGAATAGCTTTTTAGTGCTCTCTGGTTTTTAATGGCACC 60 consensus_3236#1 ----------------------------------------CACCAAGTTTACATAAAGCA 20 * * *** ** * consensus_3236#0 CCAAATGACGATCAATCTGTGATGAATACAACTTGGAAAATAAACTAATCTCCACAAAAT 120 consensus_3236#1 ACAAGTG-CG--CGAATTCTAGT-ACCATCATTTTCACTTTTGTATAATGATTGTAATAA 76 *** ** ** * * * * * * * * ** * * **** ** * consensus_3236#0 CCATTCAACTAAAGAACTTATTTGTAAAAATAAAATGTTAAAATTGTTTGTAAAAATAAC 180 consensus_3236#1 AGGAACAGCTTTAGAAATTATACTTAAACATTGT-TGTTT--CTTATGTGTAGCAATTAC 133 ** ** **** **** **** ** **** ** * **** *** ** consensus_3236#0 --TTACAACAAGTGCGCGAATTCTAGTACCATCATTTTCACTTTTGTATAATGATTGTAA 238 consensus_3236#1 AATTGTATCTAATGC---AATT---GTCTGATAAAGTTTATTCTCGCATTGTGTAAGAAG 187 ** * * * *** **** ** ** * ** * * * * ** ** * * consensus_3236#0 TAAAGGAACAGCTTTAGAAATTATACTTAAACATTGTTGTTTCTTATGTGTGGCAA 294 consensus_3236#1 TAATAGACCA--TCGAAAACCCCTTCTTGAGAA--ATTATTCCTGA---------- 229 *** ** ** * * ** * *** * * ** ** ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||