These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3254#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence [GATNATGNAATATGGATGGTTTGATAAAATGGATGATATGATGAAAAATTTAGAAGATCATCATCATTATCGTCGTCATCATTACCCAAAAGAACATCATTAATGTTATCACTAATTCTCTGATAANCATTCTCTGACAGTGAGGTATTCCCTGTNGTNGAAATCTCGATNTATGGTAAGTATAAACCTCTAAGAAAAACTACCATTCTTANTGTCCGNNATGAAAATANTCATAGATTTAN] [+] EMBL SM394 [GATNATGNAATATGGATGGTTTGATAAAATGGATGATATGATGAAAAATTTAGAAGATCATCATCATTATCGTCGTCATCATTACCCAAAAGAACATCATTAATGTTATCACTAATTCTCTGATAANCATTCTCTGACAGTGAGGTATTCCCTGTNGTNGAAATCTCGATNTATGGTAAGTATAAACCTCTAAGAAAAACTACCATTCTTANTGTCCGNNATGAAAATANTCATAGATTTAN] consensusID : consensus_3254#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 138 fasta sequence [CTTGCCTTTTCTTGATCATCATCGTCATCAAGATCATCATCGTTCATCATCACATTATGAATATGGATGGTTTGATAAAATGGATGATATGATGAAAAAATTAGAAGATGATAAACATGATGACGATGATGATGATGA] [+] EMBL CD069882 [CTTGCCTTTTCTTGATCATCATCGTCATCAAGATCATCATCGTTCATCATCACATTATGAATATGGATGGTTTGATAAAATGGATGATATGATGAAAAAATTAGAAGATGATAAACATGATGACGATGATGATGATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3254#0 GATNATGNAATATGGATGGTTTGATAAAATGGATGATATGATGAAAAATTTAGAAGATCA 60 consensus_3254#1 ------------------------------------------CTTGCCTTTTCTTGATCA 18 *** ***** consensus_3254#0 TCATCATTATCGTCGTCATCATTACCCAAAAGAACATCATTAATGTTATCACTAATTCTC 120 consensus_3254#1 TCATCGTCATCAAGATCATCATCGTTCATCATCACATTATGAAT---ATGGATGGTTTGA 75 ***** * *** ******* ** * **** ** *** ** * ** consensus_3254#0 TGATAANCATTCTCTGACAGTGAGGTATTCCCTGTNGTNGAAATCTCGATNTATGGTAAG 180 consensus_3254#1 TAAAATGGATGATATGATGAAAAAAT-TAGAAGATGATAAACATGATGACG-ATGATGAT 133 * * * ** * *** * * * * * * ** ** *** * * consensus_3254#0 TATAAACCTCTAAGAAAAACTACCATTCTTANTGTCCGNNATGAAAATANTCATAGATTT 240 consensus_3254#1 GATGA------------------------------------------------------- 138 ** * consensus_3254#0 AN 242 consensus_3254#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||