These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [TTAATTGAGGTGAAGTCCCAGGTCTTTGAACACTCTTCTTTTTGGAAGATAAGCTTGAAAAAGACGGGATGTTAGGTGGAATATCTGAGTTTCGTGTCTTATTGTTACCAACCGAAGTTTTCGCCATCTTCGGTGGAGGCCCGGATAGCGAATTTCTTCTCAAATTTTTTCTAGCCTTTGTATTGCGTTCGTCTTTAATTAAAGAAGCCGATTTTAACTGATAGTCAAGAGCTTTGATCTTTTGTTGGCGACTGTTTTCCACTTCCTTAACAAGATTTTCACGTGCTTTAACAAAGCTGTCATCAGTGGCTTTAGTTCTGTATCTATACTGGATATTCTGTAGACACTTTCCAACTGATTTCTTAACATTGACGAGCGAGAAATATACTGTACCATGGTCGGGTTCGAGC] [+] EMBL CD197115 [TTAATTGAGGTGAAGTCCCAGGTCTTTGAACACTCTTCTTTTTGGAAGATAAGCTTGAAAAAGACGGGATGTTAGGTGGAATATCTGAGTTTCGTGTCTTATTGTTACCAACCGAAGTTTTCGCCATCTTCGGTGGAGGCCCGGATAGCGAATTTCTTCTCAAATTTTTTCTAGCCTTTGTATTGCGTTCGTCTTTAATTAAAGAAGCCGATTTTAACTGATAGTCAAGAGCTTTGATCTTTTGTTGGCGACTGTTTTCCACTTCCTTAACAAGATTTTCACGTGCTTTAACAAAGCTGTCATCAGTGGCTTTAGTTCTGTATCTATACTGGATATTCTGTAGACACTTTCCAACTGATTTCTTAACATTGACGAGCGAGAAATATACTGTACCATGGTCGGGTTCGAGC] consensusID : consensus_3288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [ACAATAACGGTGTTTCCCAAAGCGGATTACATATATCTGTACTCGTTAAATGGGATGCATTAAAGAAGATACTGAAATTAGTTGTTTCTGAGTTGACATTTTTTCAATATGAATTATTTATTAGAGGCTTTTGTACTGCAGCCTAGGAATTAAGAAGCTTCATGCCCAAAAGTTGTGAAATTAATTCAGTTTCTATTTTGATGAACCCAGAAATTTGAGAAGAAATTCGCTATCCGGGCCTCCACCGAAGATGGCGAAAACTTCGGTTGGTAACAATGTGAGTTGTATTGGCTTCACGCCTGTTGTTTAAAAATAAGATATACTGTTTCTTGATAACATAATTA] [+] EMBL CD202120 [ACAATAACGGTGTTTCCCAAAGCGGATTACATATATCTGTACTCGTTAAATGGGATGCATTAAAGAAGATACTGAAATTAGTTGTTTCTGAGTTGACATTTTTTCAATATGAATTATTTATTAGAGGCTTTTGTACTGCAGCCTAGGAATTAAGAAGCTTCATGCCCAAAAGTTGTGAAATTAATTCAGTTTCTATTTTGATGAACCCAGAAATTTGAGAAGAAATTCGCTATCCGGGCCTCCACCGAAGATGGCGAAAACTTCGGTTGGTAACAATGTGAGTTGTATTGGCTTCACGCCTGTTGTTTAAAAATAAGATATACTGTTTCTTGATAACATAATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3288#0 TTAATTGAGGTGAAGTCCCAGGTCT-TTGAACA---CTCTTCTTTTTGGAAGATAAGC-T 55 consensus_3288#1 ACAATAACGGTGTTTCCCAAAGCGGATTACATATATCTGTACTCGTTAAATGGGATGCAT 60 *** **** ** * * ** * * ** * ** ** * * * ** * consensus_3288#0 TGAAAAAGACGG-GATGTTAGGTGGAATATCTGAGTTTCGTGTCTTATTGTTACCAACCG 114 consensus_3288#1 TAAAGAAGATACTGAAATTAGTTG---TTTCTGAGTTG-ACATTTTTTCAATATGAATTA 116 * ** **** ** **** ** * ******** * ** * ** ** consensus_3288#0 AAGTTTTCGCCATCTTCGGTGGAGGCCCGGATAGCGAATTTCTTCTCAAATTTTTTCTAG 174 consensus_3288#1 TTTATTAGAGGCTTTTGTACTGCAGCCTAGGAATTAAGAAGCTTC----ATGCCCAAAAG 172 ** * ** * *** * * * **** ** ** consensus_3288#0 CCTTTGTATTGCGTTCGTCTTTAATTAAAGAAGCCGATTTTAACTGATAGTCAAGAGCTT 234 consensus_3288#1 TTGTGAAATTAATTCAGTTTCTATTTTGATGAACC-----CAGAAATTTGAGAAGAAATT 227 * *** * ** * ** ** * * ** * * * **** ** consensus_3288#0 TGATCTTTTGTTGGCGACTGTTTTCCACTTCCTTAACAAGATTTTCACGTGCTTTAACAA 294 consensus_3288#1 CGCTATCCGG---------GCCTCCACCGAAGATGGCGAAAACTTCGGTTGGT--AACAA 276 * * * * * * * * * * * * *** ** * ***** consensus_3288#0 AGCTGTCATCAGTGGCTTTAGTTCTGTATCTATACTGGATATTCTGTAGACACTTTCCAA 354 consensus_3288#1 TGTGAGTTGTATTGGCTTCACGCCTGTTGTT----TAAAAATAAGATATACTGTTTCTTG 332 * * ****** * **** * * * ** ** ** **** consensus_3288#0 CTGATTTCTTAACATTGACGAGCGAGAAATATACTGTACCATGGTCGGGTTCGAGC 410 consensus_3288#1 ATAACATAATTA-------------------------------------------- 344 * * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||