cluster # 3301

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Schistosoma mansoni
cluster # 3301 cluster # 3301 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3301#0 length = 448 sequences # 1

consensus_3301#1 length = 441 sequences # 1

consensusID : consensus_3301#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence

                              [GACAGCGAGCATCCTCTAAAGAATCTTCGAAATCTGTAACGTGGTAAGTGCTAGACTTCCCAAAAGCATTTCGATGATATGGTCTTTTAGGAGTTACTCTTGATGATCGAGCTCGTTTGACAGATGCAGACATCCGTTTAGATAAACAAGGTCTAGCTTTTGGTTTTTGATGACCGATGTTTCCATATTTGTTTTGGAGTTCAGCAACTAACAATTCCAATTTTTCATCCTCGAATTCGTGATAAAGATTGAACACCTTACGTTTGTCTTGCCGGGACAAGCGTAACTTAAGCACTTCACGTACAGGCTTAGTTCTGTCACACAGTTTTTCTTTATCACTAATATATTAATCAGTCGAATTTCCATCATCCTTTTCTAGTTTCAATTCTTTGCTCGATGATACCCTCATTATTCCAATCAGTAAACTTATTACCTACTGTATTTTCAA]

[+] EMBL CD125925             [GACAGCGAGCATCCTCTAAAGAATCTTCGAAATCTGTAACGTGGTAAGTGCTAGACTTCCCAAAAGCATTTCGATGATATGGTCTTTTAGGAGTTACTCTTGATGATCGAGCTCGTTTGACAGATGCAGACATCCGTTTAGATAAACAAGGTCTAGCTTTTGGTTTTTGATGACCGATGTTTCCATATTTGTTTTGGAGTTCAGCAACTAACAATTCCAATTTTTCATCCTCGAATTCGTGATAAAGATTGAACACCTTACGTTTGTCTTGCCGGGACAAGCGTAACTTAAGCACTTCACGTACAGGCTTAGTTCTGTCACACAGTTTTTCTTTATCACTAATATATTAATCAGTCGAATTTCCATCATCCTTTTCTAGTTTCAATTCTTTGCTCGATGATACCCTCATTATTCCAATCAGTAAACTTATTACCTACTGTATTTTCAA]




>consensus_3301#0
GACAGCGAGCATCCTCTAAAGAATCTTCGAAATCTGTAACGTGGTAAGTGCTAGACTTCC
CAAAAGCATTTCGATGATATGGTCTTTTAGGAGTTACTCTTGATGATCGAGCTCGTTTGA
CAGATGCAGACATCCGTTTAGATAAACAAGGTCTAGCTTTTGGTTTTTGATGACCGATGT
TTCCATATTTGTTTTGGAGTTCAGCAACTAACAATTCCAATTTTTCATCCTCGAATTCGT
GATAAAGATTGAACACCTTACGTTTGTCTTGCCGGGACAAGCGTAACTTAAGCACTTCAC
GTACAGGCTTAGTTCTGTCACACAGTTTTTCTTTATCACTAATATATTAATCAGTCGAAT
TTCCATCATCCTTTTCTAGTTTCAATTCTTTGCTCGATGATACCCTCATTATTCCAATCA
GTAAACTTATTACCTACTGTATTTTCAA

consensusID : consensus_3301#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [GAATCTTCGAAATCTGTAACGTGGTAAGTGCTAGACTTCCCAAAAGCATTTCGATGATATGGTCTTTTAGGAGTTACTCTTAACTGATCGAGCTCGTTTGACAGATGCAGCACATCCGTTTAGATCAACAAGGTCTAGCTTTTGGTTCTTGATGACCGATGTTTCCATATTTGTCCCGGAGTTCAGCAACTAACAACTTCCAATTTTACATCCTCGACATTCCGTGATAAAGATTGAACACCTTACGTTAGTCTTGCCGGGACAAGCGTACACTCTAAGCACTTCACGTACCAGCTTCAATTCTGTACAAAACAGTATTACTTTATCACTAACTATAATGAATCACTCCAACTTCCATCATCCTCTTACTACTACCAATCCTCTGCTGACTGATACCATCATTATTCAAATCAATAAACATATCACCTACTGTATCTTCAC]

[+] EMBL CD125910             [GAATCTTCGAAATCTGTAACGTGGTAAGTGCTAGACTTCCCAAAAGCATTTCGATGATATGGTCTTTTAGGAGTTACTCTTAACTGATCGAGCTCGTTTGACAGATGCAGCACATCCGTTTAGATCAACAAGGTCTAGCTTTTGGTTCTTGATGACCGATGTTTCCATATTTGTCCCGGAGTTCAGCAACTAACAACTTCCAATTTTACATCCTCGACATTCCGTGATAAAGATTGAACACCTTACGTTAGTCTTGCCGGGACAAGCGTACACTCTAAGCACTTCACGTACCAGCTTCAATTCTGTACAAAACAGTATTACTTTATCACTAACTATAATGAATCACTCCAACTTCCATCATCCTCTTACTACTACCAATCCTCTGCTGACTGATACCATCATTATTCAAATCAATAAACATATCACCTACTGTATCTTCAC]




>consensus_3301#1
GAATCTTCGAAATCTGTAACGTGGTAAGTGCTAGACTTCCCAAAAGCATTTCGATGATAT
GGTCTTTTAGGAGTTACTCTTAACTGATCGAGCTCGTTTGACAGATGCAGCACATCCGTT
TAGATCAACAAGGTCTAGCTTTTGGTTCTTGATGACCGATGTTTCCATATTTGTCCCGGA
GTTCAGCAACTAACAACTTCCAATTTTACATCCTCGACATTCCGTGATAAAGATTGAACA
CCTTACGTTAGTCTTGCCGGGACAAGCGTACACTCTAAGCACTTCACGTACCAGCTTCAA
TTCTGTACAAAACAGTATTACTTTATCACTAACTATAATGAATCACTCCAACTTCCATCA
TCCTCTTACTACTACCAATCCTCTGCTGACTGATACCATCATTATTCAAATCAATAAACA
TATCACCTACTGTATCTTCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3301#0      GACAGCGAGCATCCTCTAAAGAATCTTCGAAATCTGTAACGTGGTAAGTGCTAGACTTCC 60
consensus_3301#1      --------------------GAATCTTCGAAATCTGTAACGTGGTAAGTGCTAGACTTCC 40
                                          ****************************************

consensus_3301#0      CAAAAGCATTTCGATGATATGGTCTTTTAGGAGTTACTCTTGA-TGATCGAGCTCGTTTG 119
consensus_3301#1      CAAAAGCATTTCGATGATATGGTCTTTTAGGAGTTACTCTTAACTGATCGAGCTCGTTTG 100
                      ***************************************** * ****************

consensus_3301#0      ACAGATGCAG-ACATCCGTTTAGATAAACAAGGTCTAGCTTTTGGTTTTTGATGACCGAT 178
consensus_3301#1      ACAGATGCAGCACATCCGTTTAGATCAACAAGGTCTAGCTTTTGGTTCTTGATGACCGAT 160
                      ********** ************** ********************* ************

consensus_3301#0      GTTTCCATATTTGTTTTGGAGTTCAGCAACTAACAA-TTCCAATTTTTCATCCTCGAA-- 235
consensus_3301#1      GTTTCCATATTTGTCCCGGAGTTCAGCAACTAACAACTTCCAATTTTACATCCTCGACAT 220
                      **************   ******************* ********** *********   

consensus_3301#0      TTCGTGATAAAGATTGAACACCTTACGTTTGTCTTGCCGGGACAAGCGTA-ACT-TAAGC 293
consensus_3301#1      TCCGTGATAAAGATTGAACACCTTACGTTAGTCTTGCCGGGACAAGCGTACACTCTAAGC 280
                      * *************************** ******************** *** *****

consensus_3301#0      ACTTCACGTACAGGCTT-AGTTCTGTC--ACACAGTTTTTCTTTATCACTAA-TATATT- 348
consensus_3301#1      ACTTCACGTACCAGCTTCAATTCTGTACAAAACAGTATTACTTTATCACTAACTATAATG 340
                      ***********  **** * ******   * ***** ** ************ **** * 

consensus_3301#0      AATCAGTCGAATTTCCATCATCCTTTT-CTAGTTTCAATTCTTTGCTCGATGATACCCTC 407
consensus_3301#1      AATCACTCCAACTTCCATCATCCTCTTACTACTACCAATCCTCTGCTGACTGATACCATC 400
                      ***** ** ** ************ ** *** *  **** ** ****   ******* **

consensus_3301#0      ATTATTCCAATCAGTAAACTTATTACCTACTGTATTTTCAA 448
consensus_3301#1      ATTATTCAAATCAATAAACATATCACCTACTGTATCTTCAC 441
                      ******* ***** ***** *** *********** ****