These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3301#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [GACAGCGAGCATCCTCTAAAGAATCTTCGAAATCTGTAACGTGGTAAGTGCTAGACTTCCCAAAAGCATTTCGATGATATGGTCTTTTAGGAGTTACTCTTGATGATCGAGCTCGTTTGACAGATGCAGACATCCGTTTAGATAAACAAGGTCTAGCTTTTGGTTTTTGATGACCGATGTTTCCATATTTGTTTTGGAGTTCAGCAACTAACAATTCCAATTTTTCATCCTCGAATTCGTGATAAAGATTGAACACCTTACGTTTGTCTTGCCGGGACAAGCGTAACTTAAGCACTTCACGTACAGGCTTAGTTCTGTCACACAGTTTTTCTTTATCACTAATATATTAATCAGTCGAATTTCCATCATCCTTTTCTAGTTTCAATTCTTTGCTCGATGATACCCTCATTATTCCAATCAGTAAACTTATTACCTACTGTATTTTCAA] [+] EMBL CD125925 [GACAGCGAGCATCCTCTAAAGAATCTTCGAAATCTGTAACGTGGTAAGTGCTAGACTTCCCAAAAGCATTTCGATGATATGGTCTTTTAGGAGTTACTCTTGATGATCGAGCTCGTTTGACAGATGCAGACATCCGTTTAGATAAACAAGGTCTAGCTTTTGGTTTTTGATGACCGATGTTTCCATATTTGTTTTGGAGTTCAGCAACTAACAATTCCAATTTTTCATCCTCGAATTCGTGATAAAGATTGAACACCTTACGTTTGTCTTGCCGGGACAAGCGTAACTTAAGCACTTCACGTACAGGCTTAGTTCTGTCACACAGTTTTTCTTTATCACTAATATATTAATCAGTCGAATTTCCATCATCCTTTTCTAGTTTCAATTCTTTGCTCGATGATACCCTCATTATTCCAATCAGTAAACTTATTACCTACTGTATTTTCAA] consensusID : consensus_3301#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [GAATCTTCGAAATCTGTAACGTGGTAAGTGCTAGACTTCCCAAAAGCATTTCGATGATATGGTCTTTTAGGAGTTACTCTTAACTGATCGAGCTCGTTTGACAGATGCAGCACATCCGTTTAGATCAACAAGGTCTAGCTTTTGGTTCTTGATGACCGATGTTTCCATATTTGTCCCGGAGTTCAGCAACTAACAACTTCCAATTTTACATCCTCGACATTCCGTGATAAAGATTGAACACCTTACGTTAGTCTTGCCGGGACAAGCGTACACTCTAAGCACTTCACGTACCAGCTTCAATTCTGTACAAAACAGTATTACTTTATCACTAACTATAATGAATCACTCCAACTTCCATCATCCTCTTACTACTACCAATCCTCTGCTGACTGATACCATCATTATTCAAATCAATAAACATATCACCTACTGTATCTTCAC] [+] EMBL CD125910 [GAATCTTCGAAATCTGTAACGTGGTAAGTGCTAGACTTCCCAAAAGCATTTCGATGATATGGTCTTTTAGGAGTTACTCTTAACTGATCGAGCTCGTTTGACAGATGCAGCACATCCGTTTAGATCAACAAGGTCTAGCTTTTGGTTCTTGATGACCGATGTTTCCATATTTGTCCCGGAGTTCAGCAACTAACAACTTCCAATTTTACATCCTCGACATTCCGTGATAAAGATTGAACACCTTACGTTAGTCTTGCCGGGACAAGCGTACACTCTAAGCACTTCACGTACCAGCTTCAATTCTGTACAAAACAGTATTACTTTATCACTAACTATAATGAATCACTCCAACTTCCATCATCCTCTTACTACTACCAATCCTCTGCTGACTGATACCATCATTATTCAAATCAATAAACATATCACCTACTGTATCTTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3301#0 GACAGCGAGCATCCTCTAAAGAATCTTCGAAATCTGTAACGTGGTAAGTGCTAGACTTCC 60 consensus_3301#1 --------------------GAATCTTCGAAATCTGTAACGTGGTAAGTGCTAGACTTCC 40 **************************************** consensus_3301#0 CAAAAGCATTTCGATGATATGGTCTTTTAGGAGTTACTCTTGA-TGATCGAGCTCGTTTG 119 consensus_3301#1 CAAAAGCATTTCGATGATATGGTCTTTTAGGAGTTACTCTTAACTGATCGAGCTCGTTTG 100 ***************************************** * **************** consensus_3301#0 ACAGATGCAG-ACATCCGTTTAGATAAACAAGGTCTAGCTTTTGGTTTTTGATGACCGAT 178 consensus_3301#1 ACAGATGCAGCACATCCGTTTAGATCAACAAGGTCTAGCTTTTGGTTCTTGATGACCGAT 160 ********** ************** ********************* ************ consensus_3301#0 GTTTCCATATTTGTTTTGGAGTTCAGCAACTAACAA-TTCCAATTTTTCATCCTCGAA-- 235 consensus_3301#1 GTTTCCATATTTGTCCCGGAGTTCAGCAACTAACAACTTCCAATTTTACATCCTCGACAT 220 ************** ******************* ********** ********* consensus_3301#0 TTCGTGATAAAGATTGAACACCTTACGTTTGTCTTGCCGGGACAAGCGTA-ACT-TAAGC 293 consensus_3301#1 TCCGTGATAAAGATTGAACACCTTACGTTAGTCTTGCCGGGACAAGCGTACACTCTAAGC 280 * *************************** ******************** *** ***** consensus_3301#0 ACTTCACGTACAGGCTT-AGTTCTGTC--ACACAGTTTTTCTTTATCACTAA-TATATT- 348 consensus_3301#1 ACTTCACGTACCAGCTTCAATTCTGTACAAAACAGTATTACTTTATCACTAACTATAATG 340 *********** **** * ****** * ***** ** ************ **** * consensus_3301#0 AATCAGTCGAATTTCCATCATCCTTTT-CTAGTTTCAATTCTTTGCTCGATGATACCCTC 407 consensus_3301#1 AATCACTCCAACTTCCATCATCCTCTTACTACTACCAATCCTCTGCTGACTGATACCATC 400 ***** ** ** ************ ** *** * **** ** **** ******* ** consensus_3301#0 ATTATTCCAATCAGTAAACTTATTACCTACTGTATTTTCAA 448 consensus_3301#1 ATTATTCAAATCAATAAACATATCACCTACTGTATCTTCAC 441 ******* ***** ***** *** *********** **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||