These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3304#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 528 fasta sequence [CTGAAAGAATATTTTATCAAATATATGATTTACAATGTCCCCAATCATCCCGTTGCGTGAAATTAGTACCATTAAGTGGTCAGAAAACTCTATCTGAACAACAGTGACCGTAAATCCAGCAACAGGAAGCTGCAAAGTAGACTAGAAAACTTTAATACACATGAACGCAATTACCTTGAGTACAGCAGGTAAATTCATTTACAGTAGACCTTTAAAAAAAACAGAAGGGTAGTCTCGAGTAGTAGGAATAAAAGAATAGGTGGTCTATAACAATTCTCGGGATTTGCAGCACCTCGAATACCCAATCACTGGTGTATAATAATTTTCCCTAAACGGACTGAACCTACACGAACAGAAACATTTAAGGACTATGGTACACAACAAATAGTATTATAAGTTATAATTCAAGATGAATGTAAACACTGCAACTCGACAGTGTACACGCTACCGCAGAGTTGAGCTATAGAAAAAGGTCACATAAAAAGACCAGATGTTGTAACACAAAGCACACAACATAAGGCATAACTC] [+] EMBL CD189827 [CTGAAAGAATATTTTATCAAATATATGATTTACAATGTCCCCAATCATCCCGTTGCGTGAAATTAGTACCATTAAGTGGTCAGAAAACTCTATCTGAACAACAGTGACCGTAAATCCAGCAACAGGAAGCTGCAAAGTAGACTAGAAAACTTTAATACACATGAACGCAATTACCTTGAGTACAGCAGGTAAATTCATTTACAGTAGACCTTTAAAAAAAACAGAAGGGTAGTCTCGAGTAGTAGGAATAAAAGAATAGGTGGTCTATAACAATTCTCGGGATTTGCAGCACCTCGAATACCCAATCACTGGTGTATAATAATTTTCCCTAAACGGACTGAACCTACACGAACAGAAACATTTAAGGACTATGGTACACAACAAATAGTATTATAAGTTATAATTCAAGATGAATGTAAACACTGCAACTCGACAGTGTACACGCTACCGCAGAGTTGAGCTATAGAAAAAGGTCACATAAAAAGACCAGATGTTGTAACACAAAGCACACAACATAAGGCATAACTC] consensusID : consensus_3304#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [CAGTGTCCCCAATCATCCCGTTGCGTGAAATTAGCACCATTAAGTGGTCAGAACACTCTATCTGAACAACAGTGACCGTAAATCCAGCAACAGGAAGCTGCAAAGTACACTTGAGTACAGCAGGTAAATTCATTTACAGTAGACCTTTAAAAAAAACAGAAGGGTAGTCTCGAGTAGTAGGAATAAAAGAATAGGTGGTCTATAACAATTCTCGGGATTTGCAGCACCTCGAATACCCAATCACTGGTGTATAATAATTTTCCCTAAACGGACTGAACACA] [+] EMBL CD133250 [CAGTGTCCCCAATCATCCCGTTGCGTGAAATTAGCACCATTAAGTGGTCAGAACACTCTATCTGAACAACAGTGACCGTAAATCCAGCAACAGGAAGCTGCAAAGTACACTTGAGTACAGCAGGTAAATTCATTTACAGTAGACCTTTAAAAAAAACAGAAGGGTAGTCTCGAGTAGTAGGAATAAAAGAATAGGTGGTCTATAACAATTCTCGGGATTTGCAGCACCTCGAATACCCAATCACTGGTGTATAATAATTTTCCCTAAACGGACTGAACACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3304#0 CTGAAAGAATATTTTATCAAATATATGATTTACAATGTCCCCAATCATCCCGTTGCGTGA 60 consensus_3304#1 --------------------------------CAGTGTCCCCAATCATCCCGTTGCGTGA 28 ** ************************* consensus_3304#0 AATTAGTACCATTAAGTGGTCAGAAAACTCTATCTGAACAACAGTGACCGTAAATCCAGC 120 consensus_3304#1 AATTAGCACCATTAAGTGGTCAGAACACTCTATCTGAACAACAGTGACCGTAAATCCAGC 88 ****** ****************** ********************************** consensus_3304#0 AACAGGAAGCTGCAAAGTAGACTAGAAAACTTTAATACACATGAACGCAATTACCTTGAG 180 consensus_3304#1 AACAGGAAGCTGCAAAGTACACT---------------------------------TGAG 115 ******************* *** **** consensus_3304#0 TACAGCAGGTAAATTCATTTACAGTAGACCTTTAAAAAAAACAGAAGGGTAGTCTCGAGT 240 consensus_3304#1 TACAGCAGGTAAATTCATTTACAGTAGACCTTTAAAAAAAACAGAAGGGTAGTCTCGAGT 175 ************************************************************ consensus_3304#0 AGTAGGAATAAAAGAATAGGTGGTCTATAACAATTCTCGGGATTTGCAGCACCTCGAATA 300 consensus_3304#1 AGTAGGAATAAAAGAATAGGTGGTCTATAACAATTCTCGGGATTTGCAGCACCTCGAATA 235 ************************************************************ consensus_3304#0 CCCAATCACTGGTGTATAATAATTTTCCCTAAACGGACTGAACCTACACGAACAGAAACA 360 consensus_3304#1 CCCAATCACTGGTGTATAATAATTTTCCCTAAACGGACTGAACACA-------------- 281 ******************************************* * consensus_3304#0 TTTAAGGACTATGGTACACAACAAATAGTATTATAAGTTATAATTCAAGATGAATGTAAA 420 consensus_3304#1 ------------------------------------------------------------ consensus_3304#0 CACTGCAACTCGACAGTGTACACGCTACCGCAGAGTTGAGCTATAGAAAAAGGTCACATA 480 consensus_3304#1 ------------------------------------------------------------ consensus_3304#0 AAAAGACCAGATGTTGTAACACAAAGCACACAACATAAGGCATAACTC 528 consensus_3304#1 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||