cluster # 3304

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Schistosoma mansoni
cluster # 3304 cluster # 3304 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3304#0 length = 528 sequences # 1

consensus_3304#1 length = 281 sequences # 1

consensusID : consensus_3304#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 528
fasta sequence

                              [CTGAAAGAATATTTTATCAAATATATGATTTACAATGTCCCCAATCATCCCGTTGCGTGAAATTAGTACCATTAAGTGGTCAGAAAACTCTATCTGAACAACAGTGACCGTAAATCCAGCAACAGGAAGCTGCAAAGTAGACTAGAAAACTTTAATACACATGAACGCAATTACCTTGAGTACAGCAGGTAAATTCATTTACAGTAGACCTTTAAAAAAAACAGAAGGGTAGTCTCGAGTAGTAGGAATAAAAGAATAGGTGGTCTATAACAATTCTCGGGATTTGCAGCACCTCGAATACCCAATCACTGGTGTATAATAATTTTCCCTAAACGGACTGAACCTACACGAACAGAAACATTTAAGGACTATGGTACACAACAAATAGTATTATAAGTTATAATTCAAGATGAATGTAAACACTGCAACTCGACAGTGTACACGCTACCGCAGAGTTGAGCTATAGAAAAAGGTCACATAAAAAGACCAGATGTTGTAACACAAAGCACACAACATAAGGCATAACTC]

[+] EMBL CD189827             [CTGAAAGAATATTTTATCAAATATATGATTTACAATGTCCCCAATCATCCCGTTGCGTGAAATTAGTACCATTAAGTGGTCAGAAAACTCTATCTGAACAACAGTGACCGTAAATCCAGCAACAGGAAGCTGCAAAGTAGACTAGAAAACTTTAATACACATGAACGCAATTACCTTGAGTACAGCAGGTAAATTCATTTACAGTAGACCTTTAAAAAAAACAGAAGGGTAGTCTCGAGTAGTAGGAATAAAAGAATAGGTGGTCTATAACAATTCTCGGGATTTGCAGCACCTCGAATACCCAATCACTGGTGTATAATAATTTTCCCTAAACGGACTGAACCTACACGAACAGAAACATTTAAGGACTATGGTACACAACAAATAGTATTATAAGTTATAATTCAAGATGAATGTAAACACTGCAACTCGACAGTGTACACGCTACCGCAGAGTTGAGCTATAGAAAAAGGTCACATAAAAAGACCAGATGTTGTAACACAAAGCACACAACATAAGGCATAACTC]




>consensus_3304#0
CTGAAAGAATATTTTATCAAATATATGATTTACAATGTCCCCAATCATCCCGTTGCGTGA
AATTAGTACCATTAAGTGGTCAGAAAACTCTATCTGAACAACAGTGACCGTAAATCCAGC
AACAGGAAGCTGCAAAGTAGACTAGAAAACTTTAATACACATGAACGCAATTACCTTGAG
TACAGCAGGTAAATTCATTTACAGTAGACCTTTAAAAAAAACAGAAGGGTAGTCTCGAGT
AGTAGGAATAAAAGAATAGGTGGTCTATAACAATTCTCGGGATTTGCAGCACCTCGAATA
CCCAATCACTGGTGTATAATAATTTTCCCTAAACGGACTGAACCTACACGAACAGAAACA
TTTAAGGACTATGGTACACAACAAATAGTATTATAAGTTATAATTCAAGATGAATGTAAA
CACTGCAACTCGACAGTGTACACGCTACCGCAGAGTTGAGCTATAGAAAAAGGTCACATA
AAAAGACCAGATGTTGTAACACAAAGCACACAACATAAGGCATAACTC

consensusID : consensus_3304#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [CAGTGTCCCCAATCATCCCGTTGCGTGAAATTAGCACCATTAAGTGGTCAGAACACTCTATCTGAACAACAGTGACCGTAAATCCAGCAACAGGAAGCTGCAAAGTACACTTGAGTACAGCAGGTAAATTCATTTACAGTAGACCTTTAAAAAAAACAGAAGGGTAGTCTCGAGTAGTAGGAATAAAAGAATAGGTGGTCTATAACAATTCTCGGGATTTGCAGCACCTCGAATACCCAATCACTGGTGTATAATAATTTTCCCTAAACGGACTGAACACA]

[+] EMBL CD133250             [CAGTGTCCCCAATCATCCCGTTGCGTGAAATTAGCACCATTAAGTGGTCAGAACACTCTATCTGAACAACAGTGACCGTAAATCCAGCAACAGGAAGCTGCAAAGTACACTTGAGTACAGCAGGTAAATTCATTTACAGTAGACCTTTAAAAAAAACAGAAGGGTAGTCTCGAGTAGTAGGAATAAAAGAATAGGTGGTCTATAACAATTCTCGGGATTTGCAGCACCTCGAATACCCAATCACTGGTGTATAATAATTTTCCCTAAACGGACTGAACACA]




>consensus_3304#1
CAGTGTCCCCAATCATCCCGTTGCGTGAAATTAGCACCATTAAGTGGTCAGAACACTCTA
TCTGAACAACAGTGACCGTAAATCCAGCAACAGGAAGCTGCAAAGTACACTTGAGTACAG
CAGGTAAATTCATTTACAGTAGACCTTTAAAAAAAACAGAAGGGTAGTCTCGAGTAGTAG
GAATAAAAGAATAGGTGGTCTATAACAATTCTCGGGATTTGCAGCACCTCGAATACCCAA
TCACTGGTGTATAATAATTTTCCCTAAACGGACTGAACACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3304#0      CTGAAAGAATATTTTATCAAATATATGATTTACAATGTCCCCAATCATCCCGTTGCGTGA 60
consensus_3304#1      --------------------------------CAGTGTCCCCAATCATCCCGTTGCGTGA 28
                                                      ** *************************

consensus_3304#0      AATTAGTACCATTAAGTGGTCAGAAAACTCTATCTGAACAACAGTGACCGTAAATCCAGC 120
consensus_3304#1      AATTAGCACCATTAAGTGGTCAGAACACTCTATCTGAACAACAGTGACCGTAAATCCAGC 88
                      ****** ****************** **********************************

consensus_3304#0      AACAGGAAGCTGCAAAGTAGACTAGAAAACTTTAATACACATGAACGCAATTACCTTGAG 180
consensus_3304#1      AACAGGAAGCTGCAAAGTACACT---------------------------------TGAG 115
                      ******************* ***                                 ****

consensus_3304#0      TACAGCAGGTAAATTCATTTACAGTAGACCTTTAAAAAAAACAGAAGGGTAGTCTCGAGT 240
consensus_3304#1      TACAGCAGGTAAATTCATTTACAGTAGACCTTTAAAAAAAACAGAAGGGTAGTCTCGAGT 175
                      ************************************************************

consensus_3304#0      AGTAGGAATAAAAGAATAGGTGGTCTATAACAATTCTCGGGATTTGCAGCACCTCGAATA 300
consensus_3304#1      AGTAGGAATAAAAGAATAGGTGGTCTATAACAATTCTCGGGATTTGCAGCACCTCGAATA 235
                      ************************************************************

consensus_3304#0      CCCAATCACTGGTGTATAATAATTTTCCCTAAACGGACTGAACCTACACGAACAGAAACA 360
consensus_3304#1      CCCAATCACTGGTGTATAATAATTTTCCCTAAACGGACTGAACACA-------------- 281
                      *******************************************  *              

consensus_3304#0      TTTAAGGACTATGGTACACAACAAATAGTATTATAAGTTATAATTCAAGATGAATGTAAA 420
consensus_3304#1      ------------------------------------------------------------
                                                                                  

consensus_3304#0      CACTGCAACTCGACAGTGTACACGCTACCGCAGAGTTGAGCTATAGAAAAAGGTCACATA 480
consensus_3304#1      ------------------------------------------------------------
                                                                                  

consensus_3304#0      AAAAGACCAGATGTTGTAACACAAAGCACACAACATAAGGCATAACTC 528
consensus_3304#1      ------------------------------------------------