cluster # 3352

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3352 cluster # 3352 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3352#0 length = 422 sequences # 1

consensus_3352#1 length = 351 sequences # 1

consensusID : consensus_3352#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [CGTGGTCTAATTAGGTACCTATCTTTATGATCAGTGTGACTCAATTAAACACGATTTAACTATTCAAAAAATACAAAGCACACACTCCATCCATGCATATCACATACTGAAAAATGTTTTCTCTCTCAGCTTGCTAGAATTTCAGTATTTGTACGATGCTTCCATGGATCAGGTCTTTGCTGCTTGTCTAGTTCGCTACCTCAGGCATCTCAAAACCGTACCGGCTATATGCCTTCCACGTCAGTATCAACGAACATTATGTGATAACCCGATGTAAGCTACTTTTCTGTATTATTCTGTACAAGGTGGAAAATCGTTATAAGTCGTCTGGTAAAGGCGATTGTAATCGAAGAGTCCATGGCATGGCTTTCTACACTTGGTGGTGGATATTCTTCACTTGGTGATCACAATGATTATGCGGT]

[+] EMBL CD196440             [CGTGGTCTAATTAGGTACCTATCTTTATGATCAGTGTGACTCAATTAAACACGATTTAACTATTCAAAAAATACAAAGCACACACTCCATCCATGCATATCACATACTGAAAAATGTTTTCTCTCTCAGCTTGCTAGAATTTCAGTATTTGTACGATGCTTCCATGGATCAGGTCTTTGCTGCTTGTCTAGTTCGCTACCTCAGGCATCTCAAAACCGTACCGGCTATATGCCTTCCACGTCAGTATCAACGAACATTATGTGATAACCCGATGTAAGCTACTTTTCTGTATTATTCTGTACAAGGTGGAAAATCGTTATAAGTCGTCTGGTAAAGGCGATTGTAATCGAAGAGTCCATGGCATGGCTTTCTACACTTGGTGGTGGATATTCTTCACTTGGTGATCACAATGATTATGCGGT]




>consensus_3352#0
CGTGGTCTAATTAGGTACCTATCTTTATGATCAGTGTGACTCAATTAAACACGATTTAAC
TATTCAAAAAATACAAAGCACACACTCCATCCATGCATATCACATACTGAAAAATGTTTT
CTCTCTCAGCTTGCTAGAATTTCAGTATTTGTACGATGCTTCCATGGATCAGGTCTTTGC
TGCTTGTCTAGTTCGCTACCTCAGGCATCTCAAAACCGTACCGGCTATATGCCTTCCACG
TCAGTATCAACGAACATTATGTGATAACCCGATGTAAGCTACTTTTCTGTATTATTCTGT
ACAAGGTGGAAAATCGTTATAAGTCGTCTGGTAAAGGCGATTGTAATCGAAGAGTCCATG
GCATGGCTTTCTACACTTGGTGGTGGATATTCTTCACTTGGTGATCACAATGATTATGCG
GT

consensusID : consensus_3352#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence

                              [TATGTGATACCCGAGTGGAAAATCGTTATAAGTCGTCTGGTAAAGGCGATTGTAATCGAAGAGTCCATGGCATGGCTTTCTACACTTGGTGGTGGATATTCTTCACTTGGAGATCACAATGATTATGCGGTAAAGTGATATTTTTGCCTAACTCAAGTAGGCGAGTTTGGCTGGGACGGTCTCACTCTTTCAAATGAGCCTTGCGTTAGAAATTAACTCGCCTATTCTCCTAGCTAAGTCCCAATTATGGTTTGCTCAAAGCTTAATGCAGAGAGGATTCTTGAAAAATTCTGCTAAAATATTGAGACGAATATACATAATGTGGAAGCCTCTCATGAGACCTGACCTTTC]

[+] EMBL CD126083             [TATGTGATACCCGAGTGGAAAATCGTTATAAGTCGTCTGGTAAAGGCGATTGTAATCGAAGAGTCCATGGCATGGCTTTCTACACTTGGTGGTGGATATTCTTCACTTGGAGATCACAATGATTATGCGGTAAAGTGATATTTTTGCCTAACTCAAGTAGGCGAGTTTGGCTGGGACGGTCTCACTCTTTCAAATGAGCCTTGCGTTAGAAATTAACTCGCCTATTCTCCTAGCTAAGTCCCAATTATGGTTTGCTCAAAGCTTAATGCAGAGAGGATTCTTGAAAAATTCTGCTAAAATATTGAGACGAATATACATAATGTGGAAGCCTCTCATGAGACCTGACCTTTC]




>consensus_3352#1
TATGTGATACCCGAGTGGAAAATCGTTATAAGTCGTCTGGTAAAGGCGATTGTAATCGAA
GAGTCCATGGCATGGCTTTCTACACTTGGTGGTGGATATTCTTCACTTGGAGATCACAAT
GATTATGCGGTAAAGTGATATTTTTGCCTAACTCAAGTAGGCGAGTTTGGCTGGGACGGT
CTCACTCTTTCAAATGAGCCTTGCGTTAGAAATTAACTCGCCTATTCTCCTAGCTAAGTC
CCAATTATGGTTTGCTCAAAGCTTAATGCAGAGAGGATTCTTGAAAAATTCTGCTAAAAT
ATTGAGACGAATATACATAATGTGGAAGCCTCTCATGAGACCTGACCTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3352#0      CGTGGTCTAATTAGGTACCTATCTTTATGATCAGTGTGACTCAATTAAACACGATTTAAC 60
consensus_3352#1      --------TATGTGATACCCGAGTGGAAAATCGTTATAAGTCGTCTGGTAAAGGCGATTG 52
                               **  * ****    *  *  ***  * * * **   *    * *       

consensus_3352#0      TATTCAAAAAATACAAAGCACA-CACTCCATCCATGCATATC-ACATACTGAAAAATGTT 118
consensus_3352#1      TAATCGAAGAGTCCATGGCATGGCTTTCTACACTTGGTGGTGGATATTCTTCACTTGGAG 112
                      ** ** ** * * **  ***   *  ** *  * **    *  * ** **  *    *  

consensus_3352#0      TTCTCTCTCAGCTTGCTAGAATTTCAGTATTTGTACGATGCTTCCATGGATCAGGTCTTT 178
consensus_3352#1      ATCACAATGATTATGCGGTAAAGTGA-TATTTTTGCCTAACTCAAGTAGGCGAGTTTGGC 171
                       ** *  * *   ***   **  * * ***** * *    **    * *   ** *    

consensus_3352#0      GCTGCTTGTCTAGTTCGCTACCTCAGGCATC---TCAAAACCGTACCGGCTATATGCCTT 235
consensus_3352#1      TGGGACGGTCTCACTCTTTCAAATGAGCCTTGCGTTAGAAATTAACTCGCC-TAT-TCTC 229
                         *   ****   **  *       ** *    * * **    **  **  ***  ** 

consensus_3352#0      CCACGTCAGTATCAACGAACATTATGTGATAACCCGATGTAAGCTACTTTTCTGTATTAT 295
consensus_3352#1      CTAGCTAAGTCCCAATTATGGTTTGCTCAAAGCTTAATGCAGAGAGGATTCTTGAAAAAT 289
                      * *  * ***  ***  *   **   * * * *   *** *       **  ** *  **

consensus_3352#0      TCTGTACAAGGTGGAAAATCGTTATAAGTCGTCTGGTAAAGGCGATTGTAATCGAAGAGT 355
consensus_3352#1      TCTGCTAAAATATTGAGACGAATATACATAATGTGGAAGCCTCTCATGAGACCTGACCTT 349
                      ****   **      * *    ****  *  * *** *    *   **  * *  *   *

consensus_3352#0      CCATGGCATGGCTTTCTACACTTGGTGGTGGATATTCTTCACTTGGTGATCACAATGATT 415
consensus_3352#1      TC---------------------------------------------------------- 351
                       *                                                          

consensus_3352#0      ATGCGGT 422
consensus_3352#1      -------