These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [AGGTATGGTCCTACTGTACATTCGGAATTCTTTAACACAGTATTCAATCTTATTCAATGCCAAATACACTGTTGTTCGATATTGTTTCAACGTCATGGTTTTAAATCATTTAAAAGTGTTCCAATCTCAGGATCACATATAACGCCAACTAAGTCTGGAATTGCCAATCAATCAATCTCAAGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTGACAAGTTCACATCCTGTTACTTCAGTAACAATGGAATCATCTGGTTCAGAGACTAGTGGATTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAATTGCCTATCCTCGGCAAAGCATCTCTAATGACATCTGATGAATTAAAATATCTAAAAGTTCATGTTCATCTTACATTTAACAGTCCTAATTTAAATGACAATTCAACTGTATTAACATTTGGTGTTCTAATTACCTTAGCTAATTCATTAGGAAGTTTATCTTCAAAATTAAGTAGTGTATGGAAGTTATGTCAATCTAGTGAATCAGTAGTTGCACAAAAAAAGCGAGAACTCTGTTGTTTGGTTCAACGTGCTTATGAAATGGTTCTGTCGATAATTNTCTCTCAATCTACTAT] [+] EMBL CD080293 [AGGTATGGTCCTACTGTACATTCGGAATTCTTTAACACAGTATTCAATCTTATTCAATGCCAAATACACTGTTGTTCGATATTGTTTCAACGTCATGGTTTTAAATCATTTAAAAGTGTTCCAATCTCAGGATCACATATAACGCCAACTAAGTCTGGAATTGCCAATCAATCAATCTCAAGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTGACAAGTTCACATCCTGTTACTTCAGTAACAATGGAATCATCTGGTTCAGAGACTAGTGGATTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAATTGCCTATCCTCGGCAAAGCATCTCTAATGACATCTGATGAATTAAAATATCTAAAAGTTCATGTTCATCTTACATTTAACAGTCCTAATTTAAATGACAATTCAACTGTATTAACATTTGGTGTTCTAATTACCTTAGCTAATTCATTAGGAAGTTTATCTTCAAAATTAAGTAGTGTATGGAAGTTATGTCAATCTAGTGAATCAGTAGTTGCACAAAAAAAGCGAGAACTCTGTTGTTTGGTTCAACGTGCTTATGAAATGGTTCTGTCGATAATTNTCTCTCAATCTACTAT] consensusID : consensus_3372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [TGGAATTGTCAATCAATCAATCTCAAGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTGACAAGTTCACATCCTGTTACTTCAGTAACAATGAAATCATCTGGTTCAGAGACTAGTGGATTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAATTGCCTATCCTCGGCAAAGCATCTCTAGTGACAGTGAGTTAAATAAATTTTTTTATGAAATGATATCCGAAATATTATGTATACTTATGTATATATGTTATTAGTTCATAAATTTTACGGAACCATCTTATTATAATCATGTTATATTTTACACCTAATTAAGACAAAGATTGTAAGTGTGAATTCTACAATTTGTTCGAATTCAACGCAATAAAACAAT] [+] EMBL CD071424 [TGGAATTGTCAATCAATCAATCTCAAGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTGACAAGTTCACATCCTGTTACTTCAGTAACAATGAAATCATCTGGTTCAGAGACTAGTGGATTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAATTGCCTATCCTCGGCAAAGCATCTCTAGTGACAGTGAGTTAAATAAATTTTTTTATGAAATGATATCCGAAATATTATGTATACTTATGTATATATGTTATTAGTTCATAAATTTTACGGAACCATCTTATTATAATCATGTTATATTTTACACCTAATTAAGACAAAGATTGTAAGTGTGAATTCTACAATTTGTTCGAATTCAACGCAATAAAACAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3372#0 AGGTATGGTCCTACTGTACATTCGGAATTCTTTAACACAGTATTCAATCTTATTCAATGC 60 consensus_3372#1 ------------------------------------------------------------ consensus_3372#0 CAAATACACTGTTGTTCGATATTGTTTCAACGTCATGGTTTTAAATCATTTAAAAGTGTT 120 consensus_3372#1 ------------------------------------------------------------ consensus_3372#0 CCAATCTCAGGATCACATATAACGCCAACTAAGTCTGGAATTGCCAATCAATCAATCTCA 180 consensus_3372#1 -----------------------------------TGGAATTGTCAATCAATCAATCTCA 25 ******** **************** consensus_3372#0 AGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTG 240 consensus_3372#1 AGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTG 85 ************************************************************ consensus_3372#0 ACAAGTTCACATCCTGTTACTTCAGTAACAATGGAATCATCTGGTTCAGAGACTAGTGGA 300 consensus_3372#1 ACAAGTTCACATCCTGTTACTTCAGTAACAATGAAATCATCTGGTTCAGAGACTAGTGGA 145 ********************************* ************************** consensus_3372#0 TTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAA 360 consensus_3372#1 TTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAA 205 ************************************************************ consensus_3372#0 TTGCCTATCCTCGGCAAAGCATCTCTAATGACATCTGATGAATTAAAATATCTAA-AAGT 419 consensus_3372#1 TTGCCTATCCTCGGCAAAGCATCTCTAGTGACAGTGAGTTAAATAAATTTTTTTATGAAA 265 *************************** ***** * ** **** * * * * * consensus_3372#0 TCATGTTCATCTTACATTTAACAGTCCTAATTTAAATGACAATTCAACTGTATTAACATT 479 consensus_3372#1 TGATATCCGAAATA---TTATGTATACTTATGTATAT-ATGTTATTAGTTCATAAATTTT 321 * ** * * ** *** * ** ** ** ** * * * * ** ** ** consensus_3372#0 TGGTGTTCTAATTACCTTAGCTAATTCATTAGGAAGTTTATCTTCAAAATTAAGTAGTGT 539 consensus_3372#1 ACGGAACCATCTTATTATAATCATGTTATATTTTACACCTAATTAAGACAAAGATTGTAA 381 * * *** ** * * ** * ** * * * * ** consensus_3372#0 ATGGAAGTTATGTCAATCTAGTGAATCAGTAGTTGCACAAAAAAAGCGAGAACTCTGTTG 599 consensus_3372#1 GTGTGAATTCTA-CAATTTGTTCGA--ATTCAACGCAATAAAACAAT------------- 425 ** * ** * **** * * * * * *** **** * consensus_3372#0 TTTGGTTCAACGTGCTTATGAAATGGTTCTGTCGATAATTNTCTCTCAATCTACTAT 656 consensus_3372#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||