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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3372 cluster # 3372       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3372#0 length = 656 sequences # 1  
consensus_3372#1 length = 425 sequences # 1  

consensusID : consensus_3372#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence
                              [AGGTATGGTCCTACTGTACATTCGGAATTCTTTAACACAGTATTCAATCTTATTCAATGCCAAATACACTGTTGTTCGATATTGTTTCAACGTCATGGTTTTAAATCATTTAAAAGTGTTCCAATCTCAGGATCACATATAACGCCAACTAAGTCTGGAATTGCCAATCAATCAATCTCAAGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTGACAAGTTCACATCCTGTTACTTCAGTAACAATGGAATCATCTGGTTCAGAGACTAGTGGATTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAATTGCCTATCCTCGGCAAAGCATCTCTAATGACATCTGATGAATTAAAATATCTAAAAGTTCATGTTCATCTTACATTTAACAGTCCTAATTTAAATGACAATTCAACTGTATTAACATTTGGTGTTCTAATTACCTTAGCTAATTCATTAGGAAGTTTATCTTCAAAATTAAGTAGTGTATGGAAGTTATGTCAATCTAGTGAATCAGTAGTTGCACAAAAAAAGCGAGAACTCTGTTGTTTGGTTCAACGTGCTTATGAAATGGTTCTGTCGATAATTNTCTCTCAATCTACTAT]

[+] EMBL CD080293             [AGGTATGGTCCTACTGTACATTCGGAATTCTTTAACACAGTATTCAATCTTATTCAATGCCAAATACACTGTTGTTCGATATTGTTTCAACGTCATGGTTTTAAATCATTTAAAAGTGTTCCAATCTCAGGATCACATATAACGCCAACTAAGTCTGGAATTGCCAATCAATCAATCTCAAGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTGACAAGTTCACATCCTGTTACTTCAGTAACAATGGAATCATCTGGTTCAGAGACTAGTGGATTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAATTGCCTATCCTCGGCAAAGCATCTCTAATGACATCTGATGAATTAAAATATCTAAAAGTTCATGTTCATCTTACATTTAACAGTCCTAATTTAAATGACAATTCAACTGTATTAACATTTGGTGTTCTAATTACCTTAGCTAATTCATTAGGAAGTTTATCTTCAAAATTAAGTAGTGTATGGAAGTTATGTCAATCTAGTGAATCAGTAGTTGCACAAAAAAAGCGAGAACTCTGTTGTTTGGTTCAACGTGCTTATGAAATGGTTCTGTCGATAATTNTCTCTCAATCTACTAT]


>consensus_3372#0 AGGTATGGTCCTACTGTACATTCGGAATTCTTTAACACAGTATTCAATCTTATTCAATGC CAAATACACTGTTGTTCGATATTGTTTCAACGTCATGGTTTTAAATCATTTAAAAGTGTT CCAATCTCAGGATCACATATAACGCCAACTAAGTCTGGAATTGCCAATCAATCAATCTCA AGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTG ACAAGTTCACATCCTGTTACTTCAGTAACAATGGAATCATCTGGTTCAGAGACTAGTGGA TTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAA TTGCCTATCCTCGGCAAAGCATCTCTAATGACATCTGATGAATTAAAATATCTAAAAGTT CATGTTCATCTTACATTTAACAGTCCTAATTTAAATGACAATTCAACTGTATTAACATTT GGTGTTCTAATTACCTTAGCTAATTCATTAGGAAGTTTATCTTCAAAATTAAGTAGTGTA TGGAAGTTATGTCAATCTAGTGAATCAGTAGTTGCACAAAAAAAGCGAGAACTCTGTTGT TTGGTTCAACGTGCTTATGAAATGGTTCTGTCGATAATTNTCTCTCAATCTACTAT



consensusID : consensus_3372#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence
                              [TGGAATTGTCAATCAATCAATCTCAAGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTGACAAGTTCACATCCTGTTACTTCAGTAACAATGAAATCATCTGGTTCAGAGACTAGTGGATTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAATTGCCTATCCTCGGCAAAGCATCTCTAGTGACAGTGAGTTAAATAAATTTTTTTATGAAATGATATCCGAAATATTATGTATACTTATGTATATATGTTATTAGTTCATAAATTTTACGGAACCATCTTATTATAATCATGTTATATTTTACACCTAATTAAGACAAAGATTGTAAGTGTGAATTCTACAATTTGTTCGAATTCAACGCAATAAAACAAT]

[+] EMBL CD071424             [TGGAATTGTCAATCAATCAATCTCAAGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTGACAAGTTCACATCCTGTTACTTCAGTAACAATGAAATCATCTGGTTCAGAGACTAGTGGATTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAATTGCCTATCCTCGGCAAAGCATCTCTAGTGACAGTGAGTTAAATAAATTTTTTTATGAAATGATATCCGAAATATTATGTATACTTATGTATATATGTTATTAGTTCATAAATTTTACGGAACCATCTTATTATAATCATGTTATATTTTACACCTAATTAAGACAAAGATTGTAAGTGTGAATTCTACAATTTGTTCGAATTCAACGCAATAAAACAAT]


>consensus_3372#1 TGGAATTGTCAATCAATCAATCTCAAGTCCATCAGGTACACTCACATCTACGCTGCCTAA AACAACATTATTGAATGAAGTAGTGACAAGTTCACATCCTGTTACTTCAGTAACAATGAA ATCATCTGGTTCAGAGACTAGTGGATTAGAATTTCTTTATCTTATACGCCATCTTATTAT GTCACTTAGTGTATTAATGGTTCAATTGCCTATCCTCGGCAAAGCATCTCTAGTGACAGT GAGTTAAATAAATTTTTTTATGAAATGATATCCGAAATATTATGTATACTTATGTATATA TGTTATTAGTTCATAAATTTTACGGAACCATCTTATTATAATCATGTTATATTTTACACC TAATTAAGACAAAGATTGTAAGTGTGAATTCTACAATTTGTTCGAATTCAACGCAATAAA ACAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3372#0      AGGTATGGTCCTACTGTACATTCGGAATTCTTTAACACAGTATTCAATCTTATTCAATGC 60
consensus_3372#1      ------------------------------------------------------------
                                                                                  

consensus_3372#0      CAAATACACTGTTGTTCGATATTGTTTCAACGTCATGGTTTTAAATCATTTAAAAGTGTT 120
consensus_3372#1      ------------------------------------------------------------
                                                                                  

consensus_3372#0      CCAATCTCAGGATCACATATAACGCCAACTAAGTCTGGAATTGCCAATCAATCAATCTCA 180
consensus_3372#1      -----------------------------------TGGAATTGTCAATCAATCAATCTCA 25
                                                         ******** ****************

consensus_3372#0      AGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTG 240
consensus_3372#1      AGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTG 85
                      ************************************************************

consensus_3372#0      ACAAGTTCACATCCTGTTACTTCAGTAACAATGGAATCATCTGGTTCAGAGACTAGTGGA 300
consensus_3372#1      ACAAGTTCACATCCTGTTACTTCAGTAACAATGAAATCATCTGGTTCAGAGACTAGTGGA 145
                      ********************************* **************************

consensus_3372#0      TTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAA 360
consensus_3372#1      TTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAA 205
                      ************************************************************

consensus_3372#0      TTGCCTATCCTCGGCAAAGCATCTCTAATGACATCTGATGAATTAAAATATCTAA-AAGT 419
consensus_3372#1      TTGCCTATCCTCGGCAAAGCATCTCTAGTGACAGTGAGTTAAATAAATTTTTTTATGAAA 265
                      *************************** *****     * ** **** * * * *  *  

consensus_3372#0      TCATGTTCATCTTACATTTAACAGTCCTAATTTAAATGACAATTCAACTGTATTAACATT 479
consensus_3372#1      TGATATCCGAAATA---TTATGTATACTTATGTATAT-ATGTTATTAGTTCATAAATTTT 321
                      * ** * *    **   ***    * ** ** ** ** *   *   * *  ** **  **

consensus_3372#0      TGGTGTTCTAATTACCTTAGCTAATTCATTAGGAAGTTTATCTTCAAAATTAAGTAGTGT 539
consensus_3372#1      ACGGAACCATCTTATTATAATCATGTTATATTTTACACCTAATTAAGACAAAGATTGTAA 381
                        *    *   ***   **   *  * **     *       ** * *   *  * **  

consensus_3372#0      ATGGAAGTTATGTCAATCTAGTGAATCAGTAGTTGCACAAAAAAAGCGAGAACTCTGTTG 599
consensus_3372#1      GTGTGAATTCTA-CAATTTGTTCGA--ATTCAACGCAATAAAACAAT------------- 425
                       **  * ** *  **** *  *  *  * *    ***  **** *               

consensus_3372#0      TTTGGTTCAACGTGCTTATGAAATGGTTCTGTCGATAATTNTCTCTCAATCTACTAT 656
consensus_3372#1      ---------------------------------------------------------
                                                                               




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)