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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3376 cluster # 3376       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3376#0 length = 583 sequences # 1  
consensus_3376#1 length = 333 sequences # 1  

consensusID : consensus_3376#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence
                              [AAGGGATGTACTTTTCTCAGTATATGAAGCACAAAGTAACATAGCTAGATCTGAAAGTGTTATATTCAATAATAGATACCCAAAACTAATGAGTTCCATATTAAAACGAAACAGCTGCCCCGTGTTTTAATTCATTTTTTTTGTAATGGTTATTTGAATCTTTCAATTGATGTTTGGGGACTACAATTGATCGATCTCTTTTTAATGTATGTGCATCCAGGGCGGATTGCCTCGATATTGTTTTAATTTACAAGCATTCTGTAAGCAGAGATGATGATGGCTATCAAGCGAATCTAGGACGCTCACTCCGTCTAATTTGGGACTCGTTAGCTGGATTTACTAGTCCTAAGTAGGACGAAACACGATTCCTGGATCCTACCATCCATCTCTGATTATTATCTAGTGTTTGTTTGTTTTTCTTGGTTTTCAATTGTTGCCTGTCAATTTATGATGCAAACAATAAACAACTTTTGTAAAAGGTATATTCTACTTAACAATCAAAAAATAGTACATTTCAATATGCTTAGGTAGTGCTTTTTGTAAGGATGACTCGTTAAAACTCTAGGAAGCCTCAAGAAGCCCA]

[+] EMBL CD161224             [AAGGGATGTACTTTTCTCAGTATATGAAGCACAAAGTAACATAGCTAGATCTGAAAGTGTTATATTCAATAATAGATACCCAAAACTAATGAGTTCCATATTAAAACGAAACAGCTGCCCCGTGTTTTAATTCATTTTTTTTGTAATGGTTATTTGAATCTTTCAATTGATGTTTGGGGACTACAATTGATCGATCTCTTTTTAATGTATGTGCATCCAGGGCGGATTGCCTCGATATTGTTTTAATTTACAAGCATTCTGTAAGCAGAGATGATGATGGCTATCAAGCGAATCTAGGACGCTCACTCCGTCTAATTTGGGACTCGTTAGCTGGATTTACTAGTCCTAAGTAGGACGAAACACGATTCCTGGATCCTACCATCCATCTCTGATTATTATCTAGTGTTTGTTTGTTTTTCTTGGTTTTCAATTGTTGCCTGTCAATTTATGATGCAAACAATAAACAACTTTTGTAAAAGGTATATTCTACTTAACAATCAAAAAATAGTACATTTCAATATGCTTAGGTAGTGCTTTTTGTAAGGATGACTCGTTAAAACTCTAGGAAGCCTCAAGAAGCCCA]


>consensus_3376#0 AAGGGATGTACTTTTCTCAGTATATGAAGCACAAAGTAACATAGCTAGATCTGAAAGTGT TATATTCAATAATAGATACCCAAAACTAATGAGTTCCATATTAAAACGAAACAGCTGCCC CGTGTTTTAATTCATTTTTTTTGTAATGGTTATTTGAATCTTTCAATTGATGTTTGGGGA CTACAATTGATCGATCTCTTTTTAATGTATGTGCATCCAGGGCGGATTGCCTCGATATTG TTTTAATTTACAAGCATTCTGTAAGCAGAGATGATGATGGCTATCAAGCGAATCTAGGAC GCTCACTCCGTCTAATTTGGGACTCGTTAGCTGGATTTACTAGTCCTAAGTAGGACGAAA CACGATTCCTGGATCCTACCATCCATCTCTGATTATTATCTAGTGTTTGTTTGTTTTTCT TGGTTTTCAATTGTTGCCTGTCAATTTATGATGCAAACAATAAACAACTTTTGTAAAAGG TATATTCTACTTAACAATCAAAAAATAGTACATTTCAATATGCTTAGGTAGTGCTTTTTG TAAGGATGACTCGTTAAAACTCTAGGAAGCCTCAAGAAGCCCA



consensusID : consensus_3376#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence
                              [ATCTGATACAATAATCCATTTATTACCACATATAGAACCTAATCTTAAATGACGCCATTCAATATAATGATCAATAGATGTTAATAAATCCGGACATAATTGTTCCCATAATTTTGTTTTAGATGATAATAATTGATCTGGTTCTCTAAACCATAATGATGATAATGATGATGAATTGGATGTTTCAATGAATGGATGAAAGATAAAACGTTCACCTAATATAGGATTTTGTTGATTTGTTAAATGAATTGGNTGTACTTTTAAAAGGGATGTACTTTTCTCAGTATATGAAGCACAAAGGAACATAGCCTGAGATCCAATTCCACGAATTTT]

[+] EMBL CD133598             [ATCTGATACAATAATCCATTTATTACCACATATAGAACCTAATCTTAAATGACGCCATTCAATATAATGATCAATAGATGTTAATAAATCCGGACATAATTGTTCCCATAATTTTGTTTTAGATGATAATAATTGATCTGGTTCTCTAAACCATAATGATGATAATGATGATGAATTGGATGTTTCAATGAATGGATGAAAGATAAAACGTTCACCTAATATAGGATTTTGTTGATTTGTTAAATGAATTGGNTGTACTTTTAAAAGGGATGTACTTTTCTCAGTATATGAAGCACAAAGGAACATAGCCTGAGATCCAATTCCACGAATTTT]


>consensus_3376#1 ATCTGATACAATAATCCATTTATTACCACATATAGAACCTAATCTTAAATGACGCCATTC AATATAATGATCAATAGATGTTAATAAATCCGGACATAATTGTTCCCATAATTTTGTTTT AGATGATAATAATTGATCTGGTTCTCTAAACCATAATGATGATAATGATGATGAATTGGA TGTTTCAATGAATGGATGAAAGATAAAACGTTCACCTAATATAGGATTTTGTTGATTTGT TAAATGAATTGGNTGTACTTTTAAAAGGGATGTACTTTTCTCAGTATATGAAGCACAAAG GAACATAGCCTGAGATCCAATTCCACGAATTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3376#0      AAGGGATGTACTTTTCTCAGTATATGAAGCACAAAGTAACATAGCTAGATCTGAAAGTGT 60
consensus_3376#1      -----ATCTGATACAAT-AATCCATTTATTACCACATA-TAGAACCTAATCTTAAATGAC 53
                           ** *  *    * * *  **  *  ** *  **  * * *   **** ***    

consensus_3376#0      TATATTCAATAATAGATACCCAAAACTAATGAGTTCCATATTAAAACGAAACAGCTGCCC 120
consensus_3376#1      GCCATTCAATA-TAATGATCAATAGATGTTAA----TAAATCCGGACATAATTGTT--CC 106
                         ******** **   * * * *  *  * *     * **    **  **  * *  **

consensus_3376#0      CGTGTTTTAATTCATTTTTTTTGTAATGGTTATTTGAATCTTTCAATTGATGTTTGGGGA 180
consensus_3376#1      CATAATTTTGTT---TTAGATGATAATAATTGATCTGGTTCTCTAAACCATAAT-GATGA 162
                      * *  ***  **   **   *  ****  **  *    *  *  **   **  * *  **

consensus_3376#0      CTACAATTGATCGATCTCTTTTTAATGTATGTGCATCCAGGGCGGATTGCCTCGATATTG 240
consensus_3376#1      TAATGAT-GATGAATTGGATGTTTCAATGAATGGATGAAAGATAAAACGTTCACCTAATA 221
                        *  ** ***  **    * **    *   ** **  * *    *  *      ** * 

consensus_3376#0      TTTTAATTTACAAGCATTCTGTAAGCAGAGATGATGATGGCTATCAAGCGAATCTAGGAC 300
consensus_3376#1      TAGGATTTTGTTGA---TTTGTTAAATGAATTGGNTGTACTTTTAAAAGGGATGTACTTT 278
                      *   * ***        * *** *   **  **    *   * * **  * ** **    

consensus_3376#0      GCTCACTCCGTCTAATTTGGGACTCGTTAGCTGGATTTACTAGTCCTAAGTAGGACGAAA 360
consensus_3376#1      TCTCAGTATATGAAGCACAAAGGAACATAGCCTGAGAT-CCAATTCCACGAATTTT---- 333
                       **** *   *  *             ****  **  * * * * * * * *        

consensus_3376#0      CACGATTCCTGGATCCTACCATCCATCTCTGATTATTATCTAGTGTTTGTTTGTTTTTCT 420
consensus_3376#1      ------------------------------------------------------------
                                                                                  

consensus_3376#0      TGGTTTTCAATTGTTGCCTGTCAATTTATGATGCAAACAATAAACAACTTTTGTAAAAGG 480
consensus_3376#1      ------------------------------------------------------------
                                                                                  

consensus_3376#0      TATATTCTACTTAACAATCAAAAAATAGTACATTTCAATATGCTTAGGTAGTGCTTTTTG 540
consensus_3376#1      ------------------------------------------------------------
                                                                                  

consensus_3376#0      TAAGGATGACTCGTTAAAACTCTAGGAAGCCTCAAGAAGCCCA 583
consensus_3376#1      -------------------------------------------
                                                                 




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)