These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3376#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [AAGGGATGTACTTTTCTCAGTATATGAAGCACAAAGTAACATAGCTAGATCTGAAAGTGTTATATTCAATAATAGATACCCAAAACTAATGAGTTCCATATTAAAACGAAACAGCTGCCCCGTGTTTTAATTCATTTTTTTTGTAATGGTTATTTGAATCTTTCAATTGATGTTTGGGGACTACAATTGATCGATCTCTTTTTAATGTATGTGCATCCAGGGCGGATTGCCTCGATATTGTTTTAATTTACAAGCATTCTGTAAGCAGAGATGATGATGGCTATCAAGCGAATCTAGGACGCTCACTCCGTCTAATTTGGGACTCGTTAGCTGGATTTACTAGTCCTAAGTAGGACGAAACACGATTCCTGGATCCTACCATCCATCTCTGATTATTATCTAGTGTTTGTTTGTTTTTCTTGGTTTTCAATTGTTGCCTGTCAATTTATGATGCAAACAATAAACAACTTTTGTAAAAGGTATATTCTACTTAACAATCAAAAAATAGTACATTTCAATATGCTTAGGTAGTGCTTTTTGTAAGGATGACTCGTTAAAACTCTAGGAAGCCTCAAGAAGCCCA] [+] EMBL CD161224 [AAGGGATGTACTTTTCTCAGTATATGAAGCACAAAGTAACATAGCTAGATCTGAAAGTGTTATATTCAATAATAGATACCCAAAACTAATGAGTTCCATATTAAAACGAAACAGCTGCCCCGTGTTTTAATTCATTTTTTTTGTAATGGTTATTTGAATCTTTCAATTGATGTTTGGGGACTACAATTGATCGATCTCTTTTTAATGTATGTGCATCCAGGGCGGATTGCCTCGATATTGTTTTAATTTACAAGCATTCTGTAAGCAGAGATGATGATGGCTATCAAGCGAATCTAGGACGCTCACTCCGTCTAATTTGGGACTCGTTAGCTGGATTTACTAGTCCTAAGTAGGACGAAACACGATTCCTGGATCCTACCATCCATCTCTGATTATTATCTAGTGTTTGTTTGTTTTTCTTGGTTTTCAATTGTTGCCTGTCAATTTATGATGCAAACAATAAACAACTTTTGTAAAAGGTATATTCTACTTAACAATCAAAAAATAGTACATTTCAATATGCTTAGGTAGTGCTTTTTGTAAGGATGACTCGTTAAAACTCTAGGAAGCCTCAAGAAGCCCA] consensusID : consensus_3376#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence [ATCTGATACAATAATCCATTTATTACCACATATAGAACCTAATCTTAAATGACGCCATTCAATATAATGATCAATAGATGTTAATAAATCCGGACATAATTGTTCCCATAATTTTGTTTTAGATGATAATAATTGATCTGGTTCTCTAAACCATAATGATGATAATGATGATGAATTGGATGTTTCAATGAATGGATGAAAGATAAAACGTTCACCTAATATAGGATTTTGTTGATTTGTTAAATGAATTGGNTGTACTTTTAAAAGGGATGTACTTTTCTCAGTATATGAAGCACAAAGGAACATAGCCTGAGATCCAATTCCACGAATTTT] [+] EMBL CD133598 [ATCTGATACAATAATCCATTTATTACCACATATAGAACCTAATCTTAAATGACGCCATTCAATATAATGATCAATAGATGTTAATAAATCCGGACATAATTGTTCCCATAATTTTGTTTTAGATGATAATAATTGATCTGGTTCTCTAAACCATAATGATGATAATGATGATGAATTGGATGTTTCAATGAATGGATGAAAGATAAAACGTTCACCTAATATAGGATTTTGTTGATTTGTTAAATGAATTGGNTGTACTTTTAAAAGGGATGTACTTTTCTCAGTATATGAAGCACAAAGGAACATAGCCTGAGATCCAATTCCACGAATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3376#0 AAGGGATGTACTTTTCTCAGTATATGAAGCACAAAGTAACATAGCTAGATCTGAAAGTGT 60 consensus_3376#1 -----ATCTGATACAAT-AATCCATTTATTACCACATA-TAGAACCTAATCTTAAATGAC 53 ** * * * * * ** * ** * ** * * * **** *** consensus_3376#0 TATATTCAATAATAGATACCCAAAACTAATGAGTTCCATATTAAAACGAAACAGCTGCCC 120 consensus_3376#1 GCCATTCAATA-TAATGATCAATAGATGTTAA----TAAATCCGGACATAATTGTT--CC 106 ******** ** * * * * * * * * ** ** ** * * ** consensus_3376#0 CGTGTTTTAATTCATTTTTTTTGTAATGGTTATTTGAATCTTTCAATTGATGTTTGGGGA 180 consensus_3376#1 CATAATTTTGTT---TTAGATGATAATAATTGATCTGGTTCTCTAAACCATAAT-GATGA 162 * * *** ** ** * **** ** * * * ** ** * * ** consensus_3376#0 CTACAATTGATCGATCTCTTTTTAATGTATGTGCATCCAGGGCGGATTGCCTCGATATTG 240 consensus_3376#1 TAATGAT-GATGAATTGGATGTTTCAATGAATGGATGAAAGATAAAACGTTCACCTAATA 221 * ** *** ** * ** * ** ** * * * * ** * consensus_3376#0 TTTTAATTTACAAGCATTCTGTAAGCAGAGATGATGATGGCTATCAAGCGAATCTAGGAC 300 consensus_3376#1 TAGGATTTTGTTGA---TTTGTTAAATGAATTGGNTGTACTTTTAAAAGGGATGTACTTT 278 * * *** * *** * ** ** * * * ** * ** ** consensus_3376#0 GCTCACTCCGTCTAATTTGGGACTCGTTAGCTGGATTTACTAGTCCTAAGTAGGACGAAA 360 consensus_3376#1 TCTCAGTATATGAAGCACAAAGGAACATAGCCTGAGAT-CCAATTCCACGAATTTT---- 333 **** * * * **** ** * * * * * * * * consensus_3376#0 CACGATTCCTGGATCCTACCATCCATCTCTGATTATTATCTAGTGTTTGTTTGTTTTTCT 420 consensus_3376#1 ------------------------------------------------------------ consensus_3376#0 TGGTTTTCAATTGTTGCCTGTCAATTTATGATGCAAACAATAAACAACTTTTGTAAAAGG 480 consensus_3376#1 ------------------------------------------------------------ consensus_3376#0 TATATTCTACTTAACAATCAAAAAATAGTACATTTCAATATGCTTAGGTAGTGCTTTTTG 540 consensus_3376#1 ------------------------------------------------------------ consensus_3376#0 TAAGGATGACTCGTTAAAACTCTAGGAAGCCTCAAGAAGCCCA 583 consensus_3376#1 ------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||