These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [ATGATGGAATATGTGTATTGATGCAATAAGCATGGAATCGTCCACCAGTATAAGTGCATAAATTGTGCAAATAGTCTATTGATTGCATATCTTCACAACAATAACATACAATATGAAGTGGATGTTTAAAAGTTTTGACAATATTTACAAGTATTTCCGGTGACGTCATTGTATATACACCTTCAGTGATTAAATACACTGATTCCAAACTGTTTTTAATCTGGCCCATCCTTAAAATGCAATCATGTGTACAACTCGAGCTGGATAATGATAGACGCTCTACTGTGTGTATCCACTCTAACATATTCTTCATTGTGGAGGTGTCCACACAAACCAATTCGTATGAAAAATAATAGGGTTCATCTTGACATGTAATCATGGTGATCATCTTCATATGAGCTATCTGATATGATATGAAACACTCTAAGGAATTAACGAAATCGGAAGATATTTGTGGAGACTGCGTTATAATATACAAAAGACAAACTGCCGAATGCTCTTGGATGACACCAGATATCTATCTACTCTCATAAGTTA] [+] EMBL CD198094 [ATGATGGAATATGTGTATTGATGCAATAAGCATGGAATCGTCCACCAGTATAAGTGCATAAATTGTGCAAATAGTCTATTGATTGCATATCTTCACAACAATAACATACAATATGAAGTGGATGTTTAAAAGTTTTGACAATATTTACAAGTATTTCCGGTGACGTCATTGTATATACACCTTCAGTGATTAAATACACTGATTCCAAACTGTTTTTAATCTGGCCCATCCTTAAAATGCAATCATGTGTACAACTCGAGCTGGATAATGATAGACGCTCTACTGTGTGTATCCACTCTAACATATTCTTCATTGTGGAGGTGTCCACACAAACCAATTCGTATGAAAAATAATAGGGTTCATCTTGACATGTAATCATGGTGATCATCTTCATATGAGCTATCTGATATGATATGAAACACTCTAAGGAATTAACGAAATCGGAAGATATTTGTGGAGACTGCGTTATAATATACAAAAGACAAACTGCCGAATGCTCTTGGATGACACCAGATATCTATCTACTCTCATAAGTTA] consensusID : consensus_3404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [ATGATGGAATATGTGTATTGATGCAATAAGCATGGAATCGTCCACCAGTATAAGTGCGTAAATTGTGCAAATAGTCTATTGTTTTCATATCTTCACAACAATAAGATACAATATGAAGTGGATGTTTCAAAGTTTTGACAATATTTTCAAGTAGTTCCGGTGACGTCATTGTAGATTCACCTTCAGTGATTAGATAGACTGATTCGAAACTCTTTTTAAACTGGCCCATCCTTAAAATGCAATCAGTTGTACAACTCGAGCTGGAGAATGATAGACGCTCTAGTGTGTTTATCCACTCTAACATATTCTTCAGTGTGGAGGTGTCCACAGAAACCAATTCGTCTGAAAAAAAATAGGGTTCATCTTGACATCTAATCATGTTGATCATCTTCATATTTGCTATCTGTTCTGATATCAAACACTTTANGGAATTAACGAAATCGGAAAGTATTTCTGGAGACTGCGNTTTATATCCAAAGAAAAACTGCCGAATGCTCTTGGNATACACCAAATATCGATCTACTCCCAGAAGTA] [+] EMBL CD198130 [ATGATGGAATATGTGTATTGATGCAATAAGCATGGAATCGTCCACCAGTATAAGTGCGTAAATTGTGCAAATAGTCTATTGTTTTCATATCTTCACAACAATAAGATACAATATGAAGTGGATGTTTCAAAGTTTTGACAATATTTTCAAGTAGTTCCGGTGACGTCATTGTAGATTCACCTTCAGTGATTAGATAGACTGATTCGAAACTCTTTTTAAACTGGCCCATCCTTAAAATGCAATCAGTTGTACAACTCGAGCTGGAGAATGATAGACGCTCTAGTGTGTTTATCCACTCTAACATATTCTTCAGTGTGGAGGTGTCCACAGAAACCAATTCGTCTGAAAAAAAATAGGGTTCATCTTGACATCTAATCATGTTGATCATCTTCATATTTGCTATCTGTTCTGATATCAAACACTTTANGGAATTAACGAAATCGGAAAGTATTTCTGGAGACTGCGNTTTATATCCAAAGAAAAACTGCCGAATGCTCTTGGNATACACCAAATATCGATCTACTCCCAGAAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3404#0 ATGATGGAATATGTGTATTGATGCAATAAGCATGGAATCGTCCACCAGTATAAGTGCATA 60 consensus_3404#1 ATGATGGAATATGTGTATTGATGCAATAAGCATGGAATCGTCCACCAGTATAAGTGCGTA 60 ********************************************************* ** consensus_3404#0 AATTGTGCAAATAGTCTATTGATTGCATATCTTCACAACAATAACATACAATATGAAGTG 120 consensus_3404#1 AATTGTGCAAATAGTCTATTGTTTTCATATCTTCACAACAATAAGATACAATATGAAGTG 120 ********************* ** ******************* *************** consensus_3404#0 GATGTTTAAAAGTTTTGACAATATTTACAAGTATTTCCGGTGACGTCATTGTATATACAC 180 consensus_3404#1 GATGTTTCAAAGTTTTGACAATATTTTCAAGTAGTTCCGGTGACGTCATTGTAGATTCAC 180 ******* ****************** ****** ******************* ** *** consensus_3404#0 CTTCAGTGATTAAATACACTGATTCCAAACTGTTTTTAATCTGGCCCATCCTTAAAATGC 240 consensus_3404#1 CTTCAGTGATTAGATAGACTGATTCGAAACTCTTTTTAAACTGGCCCATCCTTAAAATGC 240 ************ *** ******** ***** ******* ******************** consensus_3404#0 AATCATGTGTACAACTCGAGCTGGATAATGATAGACGCTCTACTGTGTGTATCCACTCTA 300 consensus_3404#1 AATCAGTTGTACAACTCGAGCTGGAGAATGATAGACGCTCTAGTGTGTTTATCCACTCTA 300 ***** ****************** **************** ***** *********** consensus_3404#0 ACATATTCTTCATTGTGGAGGTGTCCACACAAACCAATTCGTATGAAAAATAATAGGGTT 360 consensus_3404#1 ACATATTCTTCAGTGTGGAGGTGTCCACAGAAACCAATTCGTCTGAAAAAAAATAGGGTT 360 ************ **************** ************ ******* ********* consensus_3404#0 CATCTTGACATGTAATCATGGTGATCATCTTCATATGAGCTATCTGATATGATATGAAAC 420 consensus_3404#1 CATCTTGACATCTAATCATGTTGATCATCTTCATATTTGCTATCTGTTCTGATATCAAAC 420 *********** ******** *************** ******** * ****** **** consensus_3404#0 ACTCTAAGGAATTAACGAAATCGGAAGATATTTGTGGAGACTGCGTTATAATATACAAAA 480 consensus_3404#1 ACTTTANGGAATTAACGAAATCGGAAAGTATTTCTGGAGACTGCGNTTTA-TATCCAAA- 478 *** ** ******************* ***** *********** * ** *** **** consensus_3404#0 GACAAACTGCCGAATGCTCTTGGATGACACCAGATATCTATCTACTCTCATAAGTTA 537 consensus_3404#1 GAAAAACTGCCGAATGCTCTTGGNATACACCAAATATCGATCTACTCCCAGAAGTA- 534 ** ******************** ****** ***** ******** ** **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||