cluster # 3404

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Schistosoma mansoni
cluster # 3404 cluster # 3404 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3404#0 length = 537 sequences # 1

consensus_3404#1 length = 534 sequences # 1

consensusID : consensus_3404#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence

                              [ATGATGGAATATGTGTATTGATGCAATAAGCATGGAATCGTCCACCAGTATAAGTGCATAAATTGTGCAAATAGTCTATTGATTGCATATCTTCACAACAATAACATACAATATGAAGTGGATGTTTAAAAGTTTTGACAATATTTACAAGTATTTCCGGTGACGTCATTGTATATACACCTTCAGTGATTAAATACACTGATTCCAAACTGTTTTTAATCTGGCCCATCCTTAAAATGCAATCATGTGTACAACTCGAGCTGGATAATGATAGACGCTCTACTGTGTGTATCCACTCTAACATATTCTTCATTGTGGAGGTGTCCACACAAACCAATTCGTATGAAAAATAATAGGGTTCATCTTGACATGTAATCATGGTGATCATCTTCATATGAGCTATCTGATATGATATGAAACACTCTAAGGAATTAACGAAATCGGAAGATATTTGTGGAGACTGCGTTATAATATACAAAAGACAAACTGCCGAATGCTCTTGGATGACACCAGATATCTATCTACTCTCATAAGTTA]

[+] EMBL CD198094             [ATGATGGAATATGTGTATTGATGCAATAAGCATGGAATCGTCCACCAGTATAAGTGCATAAATTGTGCAAATAGTCTATTGATTGCATATCTTCACAACAATAACATACAATATGAAGTGGATGTTTAAAAGTTTTGACAATATTTACAAGTATTTCCGGTGACGTCATTGTATATACACCTTCAGTGATTAAATACACTGATTCCAAACTGTTTTTAATCTGGCCCATCCTTAAAATGCAATCATGTGTACAACTCGAGCTGGATAATGATAGACGCTCTACTGTGTGTATCCACTCTAACATATTCTTCATTGTGGAGGTGTCCACACAAACCAATTCGTATGAAAAATAATAGGGTTCATCTTGACATGTAATCATGGTGATCATCTTCATATGAGCTATCTGATATGATATGAAACACTCTAAGGAATTAACGAAATCGGAAGATATTTGTGGAGACTGCGTTATAATATACAAAAGACAAACTGCCGAATGCTCTTGGATGACACCAGATATCTATCTACTCTCATAAGTTA]




>consensus_3404#0
ATGATGGAATATGTGTATTGATGCAATAAGCATGGAATCGTCCACCAGTATAAGTGCATA
AATTGTGCAAATAGTCTATTGATTGCATATCTTCACAACAATAACATACAATATGAAGTG
GATGTTTAAAAGTTTTGACAATATTTACAAGTATTTCCGGTGACGTCATTGTATATACAC
CTTCAGTGATTAAATACACTGATTCCAAACTGTTTTTAATCTGGCCCATCCTTAAAATGC
AATCATGTGTACAACTCGAGCTGGATAATGATAGACGCTCTACTGTGTGTATCCACTCTA
ACATATTCTTCATTGTGGAGGTGTCCACACAAACCAATTCGTATGAAAAATAATAGGGTT
CATCTTGACATGTAATCATGGTGATCATCTTCATATGAGCTATCTGATATGATATGAAAC
ACTCTAAGGAATTAACGAAATCGGAAGATATTTGTGGAGACTGCGTTATAATATACAAAA
GACAAACTGCCGAATGCTCTTGGATGACACCAGATATCTATCTACTCTCATAAGTTA

consensusID : consensus_3404#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence

                              [ATGATGGAATATGTGTATTGATGCAATAAGCATGGAATCGTCCACCAGTATAAGTGCGTAAATTGTGCAAATAGTCTATTGTTTTCATATCTTCACAACAATAAGATACAATATGAAGTGGATGTTTCAAAGTTTTGACAATATTTTCAAGTAGTTCCGGTGACGTCATTGTAGATTCACCTTCAGTGATTAGATAGACTGATTCGAAACTCTTTTTAAACTGGCCCATCCTTAAAATGCAATCAGTTGTACAACTCGAGCTGGAGAATGATAGACGCTCTAGTGTGTTTATCCACTCTAACATATTCTTCAGTGTGGAGGTGTCCACAGAAACCAATTCGTCTGAAAAAAAATAGGGTTCATCTTGACATCTAATCATGTTGATCATCTTCATATTTGCTATCTGTTCTGATATCAAACACTTTANGGAATTAACGAAATCGGAAAGTATTTCTGGAGACTGCGNTTTATATCCAAAGAAAAACTGCCGAATGCTCTTGGNATACACCAAATATCGATCTACTCCCAGAAGTA]

[+] EMBL CD198130             [ATGATGGAATATGTGTATTGATGCAATAAGCATGGAATCGTCCACCAGTATAAGTGCGTAAATTGTGCAAATAGTCTATTGTTTTCATATCTTCACAACAATAAGATACAATATGAAGTGGATGTTTCAAAGTTTTGACAATATTTTCAAGTAGTTCCGGTGACGTCATTGTAGATTCACCTTCAGTGATTAGATAGACTGATTCGAAACTCTTTTTAAACTGGCCCATCCTTAAAATGCAATCAGTTGTACAACTCGAGCTGGAGAATGATAGACGCTCTAGTGTGTTTATCCACTCTAACATATTCTTCAGTGTGGAGGTGTCCACAGAAACCAATTCGTCTGAAAAAAAATAGGGTTCATCTTGACATCTAATCATGTTGATCATCTTCATATTTGCTATCTGTTCTGATATCAAACACTTTANGGAATTAACGAAATCGGAAAGTATTTCTGGAGACTGCGNTTTATATCCAAAGAAAAACTGCCGAATGCTCTTGGNATACACCAAATATCGATCTACTCCCAGAAGTA]




>consensus_3404#1
ATGATGGAATATGTGTATTGATGCAATAAGCATGGAATCGTCCACCAGTATAAGTGCGTA
AATTGTGCAAATAGTCTATTGTTTTCATATCTTCACAACAATAAGATACAATATGAAGTG
GATGTTTCAAAGTTTTGACAATATTTTCAAGTAGTTCCGGTGACGTCATTGTAGATTCAC
CTTCAGTGATTAGATAGACTGATTCGAAACTCTTTTTAAACTGGCCCATCCTTAAAATGC
AATCAGTTGTACAACTCGAGCTGGAGAATGATAGACGCTCTAGTGTGTTTATCCACTCTA
ACATATTCTTCAGTGTGGAGGTGTCCACAGAAACCAATTCGTCTGAAAAAAAATAGGGTT
CATCTTGACATCTAATCATGTTGATCATCTTCATATTTGCTATCTGTTCTGATATCAAAC
ACTTTANGGAATTAACGAAATCGGAAAGTATTTCTGGAGACTGCGNTTTATATCCAAAGA
AAAACTGCCGAATGCTCTTGGNATACACCAAATATCGATCTACTCCCAGAAGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3404#0      ATGATGGAATATGTGTATTGATGCAATAAGCATGGAATCGTCCACCAGTATAAGTGCATA 60
consensus_3404#1      ATGATGGAATATGTGTATTGATGCAATAAGCATGGAATCGTCCACCAGTATAAGTGCGTA 60
                      ********************************************************* **

consensus_3404#0      AATTGTGCAAATAGTCTATTGATTGCATATCTTCACAACAATAACATACAATATGAAGTG 120
consensus_3404#1      AATTGTGCAAATAGTCTATTGTTTTCATATCTTCACAACAATAAGATACAATATGAAGTG 120
                      ********************* ** ******************* ***************

consensus_3404#0      GATGTTTAAAAGTTTTGACAATATTTACAAGTATTTCCGGTGACGTCATTGTATATACAC 180
consensus_3404#1      GATGTTTCAAAGTTTTGACAATATTTTCAAGTAGTTCCGGTGACGTCATTGTAGATTCAC 180
                      ******* ****************** ****** ******************* ** ***

consensus_3404#0      CTTCAGTGATTAAATACACTGATTCCAAACTGTTTTTAATCTGGCCCATCCTTAAAATGC 240
consensus_3404#1      CTTCAGTGATTAGATAGACTGATTCGAAACTCTTTTTAAACTGGCCCATCCTTAAAATGC 240
                      ************ *** ******** ***** ******* ********************

consensus_3404#0      AATCATGTGTACAACTCGAGCTGGATAATGATAGACGCTCTACTGTGTGTATCCACTCTA 300
consensus_3404#1      AATCAGTTGTACAACTCGAGCTGGAGAATGATAGACGCTCTAGTGTGTTTATCCACTCTA 300
                      *****  ****************** **************** ***** ***********

consensus_3404#0      ACATATTCTTCATTGTGGAGGTGTCCACACAAACCAATTCGTATGAAAAATAATAGGGTT 360
consensus_3404#1      ACATATTCTTCAGTGTGGAGGTGTCCACAGAAACCAATTCGTCTGAAAAAAAATAGGGTT 360
                      ************ **************** ************ ******* *********

consensus_3404#0      CATCTTGACATGTAATCATGGTGATCATCTTCATATGAGCTATCTGATATGATATGAAAC 420
consensus_3404#1      CATCTTGACATCTAATCATGTTGATCATCTTCATATTTGCTATCTGTTCTGATATCAAAC 420
                      *********** ******** ***************  ******** * ****** ****

consensus_3404#0      ACTCTAAGGAATTAACGAAATCGGAAGATATTTGTGGAGACTGCGTTATAATATACAAAA 480
consensus_3404#1      ACTTTANGGAATTAACGAAATCGGAAAGTATTTCTGGAGACTGCGNTTTA-TATCCAAA- 478
                      *** ** *******************  ***** *********** * ** *** **** 

consensus_3404#0      GACAAACTGCCGAATGCTCTTGGATGACACCAGATATCTATCTACTCTCATAAGTTA 537
consensus_3404#1      GAAAAACTGCCGAATGCTCTTGGNATACACCAAATATCGATCTACTCCCAGAAGTA- 534
                      ** ********************   ****** ***** ******** ** ****