These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [GATGATGGTGATGATGACGATGATGATGATGAGGAGGAGGTGGAGGGGGATTCTACGAAACAACAACCCAATGAACTTATTAATAATGGTATTAATGAAGAAACCATTTGTACAAATAAAATATCTCTTGTAGACAATGAATGCACACAAATGATTTCTTCAATGAATAATGATACTCATATCAATGAGATTGCAGCTGATCAAACATCAGATATGTTATCTAATTGTTATAATCATCATTTAGTGAAAAGTTCTTCAATACATTCAGATTGTACAGTTGTTGAAAAAATGCCAGATCATCAAATATCGGAATCTGTTGAACAAAAAACTTCTAATACTACTACTACTACTACAGTAACATCAACATCAAATCAATCATATCGTTTAGTTTGTTTATCTGGTTCAGTTCAATCACAAATTATGGCTCAATGG] [+] EMBL CD191663 [GATGATGGTGATGATGACGATGATGATGATGAGGAGGAGGTGGAGGGGGATTCTACGAAACAACAACCCAATGAACTTATTAATAATGGTATTAATGAAGAAACCATTTGTACAAATAAAATATCTCTTGTAGACAATGAATGCACACAAATGATTTCTTCAATGAATAATGATACTCATATCAATGAGATTGCAGCTGATCAAACATCAGATATGTTATCTAATTGTTATAATCATCATTTAGTGAAAAGTTCTTCAATACATTCAGATTGTACAGTTGTTGAAAAAATGCCAGATCATCAAATATCGGAATCTGTTGAACAAAAAACTTCTAATACTACTACTACTACTACAGTAACATCAACATCAAATCAATCATATCGTTTAGTTTGTTTATCTGGTTCAGTTCAATCACAAATTATGGCTCAATGG] consensusID : consensus_3412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence [ATNCGGTAATCTGTGTGAACAAAAAATCTTCTAATACTACTACTACAGTAACATCAACATCAAATCAATCATATCGTTTAGTTTGTTTATCTGGTTCAGTTTAATCACAAATTATGGCTCAATGGCAAATATTTCAACGTGTTAAAAATTTACATAAACGTCAGATGACCACTGGGTCTTCATCAAATGATAATTCAAGGCAGAAATTATTTTGTTTACCCACTTTAATATGTTTGCCGTATCGATTTCTCTGGTGGCTTACAACTCATAATCCTGGATTCATAGAAACATCTCGATCATCCTCCGTTCTTACATCAACTGTCTTCTCAAAGTTCGATGACTCTGGTAATACTAATA] [+] EMBL CD126269 [ATNCGGTAATCTGTGTGAACAAAAAATCTTCTAATACTACTACTACAGTAACATCAACATCAAATCAATCATATCGTTTAGTTTGTTTATCTGGTTCAGTTTAATCACAAATTATGGCTCAATGGCAAATATTTCAACGTGTTAAAAATTTACATAAACGTCAGATGACCACTGGGTCTTCATCAAATGATAATTCAAGGCAGAAATTATTTTGTTTACCCACTTTAATATGTTTGCCGTATCGATTTCTCTGGTGGCTTACAACTCATAATCCTGGATTCATAGAAACATCTCGATCATCCTCCGTTCTTACATCAACTGTCTTCTCAAAGTTCGATGACTCTGGTAATACTAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3412#0 GATGATGGTGATGATGACGATGATGATGATGAGGAGGAGGTGGAGGGGGATTCTACGAAA 60 consensus_3412#1 -------------------------------------------------ATNCGGTAATC 11 ** * * consensus_3412#0 CAACAACCCAATGAACTTATTAATAATGGTATTAATGAAGAAACCATTTGTACAAATAAA 120 consensus_3412#1 TGTGTGAACAAAAAATCTTCTAATACTACTACTACAGTAACATCAACAT---CAAATCAA 68 *** ** * ***** * ** ** * * * * * * ***** ** consensus_3412#0 ATATCTCTTGTAGACAATGAATGCACACAAATGATTTCTTCAATGAATAATGATACTCAT 180 consensus_3412#1 TCATATCGTTTAGTTTGTTTATCTG-------GTTCAGTTTAATCACAAATTATGGCTCA 121 ** ** * *** * ** * * ** *** * *** ** consensus_3412#0 ATCAATGAGATTGCAGCTGATCAAACAT---CAGATATGTTATCTAATTGTTATAATCAT 237 consensus_3412#1 ATGGCAAATATTTCAACGTGTTAAAAATTTACATAAACGTCAGATGACCACTG-GGTCTT 180 ** * *** ** * * *** ** ** * * ** * * * * ** * consensus_3412#0 CATTTAGTGAAAAGTTCTTCAATACATTCAGATTGTACAGTTGTTGAAAAAATGCCAGAT 297 consensus_3412#1 CATCAAATGATAA----TTCAAGGCAG--AAATTAT---TTTGTTTACCCACTTTAATAT 231 *** * *** ** ***** ** * *** * ***** * * * * ** consensus_3412#0 CATCAA-ATATCGGAATCTGTTG-AACAAAAAACTTCTAATACTACTACTACTACTACAG 355 consensus_3412#1 GTTTGCCGTATCGATTTCTCTGGTGGCTTACAACTCATAATCCTGGATTCATAGAAACAT 291 * ***** *** * * * * **** **** ** * *** consensus_3412#0 TAACATCAACATCAAATCAATCATATCGTTTAGTTTGTTTATCTGGTTCAGTTCAATCAC 415 consensus_3412#1 CTCGATCATCCTCCGTTC--TTACATCAACTGTCTTCTCAAAGTTCGATGACTCTGGTAA 349 **** * ** ** * * *** * ** * * * ** * consensus_3412#0 AAATTATGGCTCAATGG 432 consensus_3412#1 TACTAATA--------- 357 * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||