These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3431#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [GCATCAAGTGGATTCTTGTTTTGTGATGCAGACATAACAACAGCAGGACGTATTGGGACAGTTGCAGGGACAGGTTTTAAACCTGGAGGCAGTGAATTATTAAATGATGTAGGGGGATTATTCACTGGTATCTTTGTGGTCGTAGTAGTAGCAGTAGAAGTAGTAGTAGTAGTACCACCTACGGAATCTTTCTCCAAAAGAGGATCTAACGACAATAAGTCGTCAAAAACTGAAGCAGAACCTGTTGTATTGGTAGTAGTTGCAGTATTATTGACAGCTGAAGGGTTTGATTCACCCTCCTTTCCAACAGACTCAGTTTGAGCTGAGAAAGGAATAGGTTCAATATTGGTTTGTGGAATAGAATCATCAGTGGACAATAGGTCAAGACCAAGTAAATCATCGATTGCTGAATGCTGATTGCTACCATGTACTCGTTCAACATGAGCTTCTGATGATTTATTTGACCATACATTTGTATCAGTATCAGTTACCGGTTCAACTGGTTCTTCATC] [+] EMBL CD194282 [GCATCAAGTGGATTCTTGTTTTGTGATGCAGACATAACAACAGCAGGACGTATTGGGACAGTTGCAGGGACAGGTTTTAAACCTGGAGGCAGTGAATTATTAAATGATGTAGGGGGATTATTCACTGGTATCTTTGTGGTCGTAGTAGTAGCAGTAGAAGTAGTAGTAGTAGTACCACCTACGGAATCTTTCTCCAAAAGAGGATCTAACGACAATAAGTCGTCAAAAACTGAAGCAGAACCTGTTGTATTGGTAGTAGTTGCAGTATTATTGACAGCTGAAGGGTTTGATTCACCCTCCTTTCCAACAGACTCAGTTTGAGCTGAGAAAGGAATAGGTTCAATATTGGTTTGTGGAATAGAATCATCAGTGGACAATAGGTCAAGACCAAGTAAATCATCGATTGCTGAATGCTGATTGCTACCATGTACTCGTTCAACATGAGCTTCTGATGATTTATTTGACCATACATTTGTATCAGTATCAGTTACCGGTTCAACTGGTTCTTCATC] consensusID : consensus_3431#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 172 fasta sequence [TTTCTCCAAAAGAGGATCTAACGACAATAAGTCGTCAAAAACTGAAGCAGAACCTGTTGTATTGGTAGTAGTTGCAGGGACAGGTTTTAAACCTGGAGGCAGTGAATTATTAAATGATGTAGGGGGTTATTCACTGGTATCTTTGTGGTCGTAGTAGTAGCAGTAGTAGGAG] [-] EMBL CD071858 [TTTCTCCAAAAGAGGATCTAACGACAATAAGTCGTCAAAAACTGAAGCAGAACCTGTTGTATTGGTAGTAGTTGCAGGGACAGGTTTTAAACCTGGAGGCAGTGAATTATTAAATGATGTAGGGGGTTATTCACTGGTATCTTTGTGGTCGTAGTAGTAGCAGTAGTAGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3431#0 ----GCATCAAGTGGATTCTTGTTTTGTGATGCAGACATAACAACAGCAGGAC-----GT 51 consensus_3431#1 TTTCTCCAAAAGAGGATCTAACGACAATAAGTCGTCAAAAACTGAAGCAGAACCTGTTGT 60 * *** **** * * * * *** ***** ** ** consensus_3431#0 ATTGGGA-CAGTTGCAGGGACAGGTTTTAAACCTGGAGGCAGTGAATTATTAAATGATGT 110 consensus_3431#1 ATTGGTAGTAGTTGCAGGGACAGGTTTTAAACCTGGAGGCAGTGAATTATTAAATGATGT 120 ***** * *************************************************** consensus_3431#0 AGGGGGATTATTCACTGGTATCTTTGTGGTCGTAGTAGTAGCAGTAGAAGTAGTAGTAGT 170 consensus_3431#1 AGGGGG-TTATTCACTGGTATCTTTGTGGTCGTAGTAGTAGCAGTAGTAGGAG------- 172 ****** **************************************** ** ** consensus_3431#0 AGTACCACCTACGGAATCTTTCTCCAAAAGAGGATCTAACGACAATAAGTCGTCAAAAAC 230 consensus_3431#1 ------------------------------------------------------------ consensus_3431#0 TGAAGCAGAACCTGTTGTATTGGTAGTAGTTGCAGTATTATTGACAGCTGAAGGGTTTGA 290 consensus_3431#1 ------------------------------------------------------------ consensus_3431#0 TTCACCCTCCTTTCCAACAGACTCAGTTTGAGCTGAGAAAGGAATAGGTTCAATATTGGT 350 consensus_3431#1 ------------------------------------------------------------ consensus_3431#0 TTGTGGAATAGAATCATCAGTGGACAATAGGTCAAGACCAAGTAAATCATCGATTGCTGA 410 consensus_3431#1 ------------------------------------------------------------ consensus_3431#0 ATGCTGATTGCTACCATGTACTCGTTCAACATGAGCTTCTGATGATTTATTTGACCATAC 470 consensus_3431#1 ------------------------------------------------------------ consensus_3431#0 ATTTGTATCAGTATCAGTTACCGGTTCAACTGGTTCTTCATC 512 consensus_3431#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||