cluster # 3458

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Schistosoma mansoni
cluster # 3458 cluster # 3458 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3458#0 length = 226 sequences # 1

consensus_3458#1 length = 120 sequences # 1

consensusID : consensus_3458#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 226
fasta sequence

                              [AGAAATACGTGGAAGACCTAGCAACGACAGAGGAAAAAGTTGCAAGAGGAGGAAATATCAGACAACTATATGACACAGCGAAGAAACTGGGAGGGAAATATAGTAAACCAGAGACACCGGTCAAGTACAATGAAGGTAAGCCAATCACTGAGATTCAAGAACAGAGCAAAAGATGGGTAGAACACTTTGGGAACTCTTGAATATGCCAGTCCCACTTAACCCACCG]

[+] EMBL CD194723             [AGAAATACGTGGAAGACCTAGCAACGACAGAGGAAAAAGTTGCAAGAGGAGGAAATATCAGACAACTATATGACACAGCGAAGAAACTGGGAGGGAAATATAGTAAACCAGAGACACCGGTCAAGTACAATGAAGGTAAGCCAATCACTGAGATTCAAGAACAGAGCAAAAGATGGGTAGAACACTTTGGGAACTCTTGAATATGCCAGTCCCACTTAACCCACCG]




>consensus_3458#0
AGAAATACGTGGAAGACCTAGCAACGACAGAGGAAAAAGTTGCAAGAGGAGGAAATATCA
GACAACTATATGACACAGCGAAGAAACTGGGAGGGAAATATAGTAAACCAGAGACACCGG
TCAAGTACAATGAAGGTAAGCCAATCACTGAGATTCAAGAACAGAGCAAAAGATGGGTAG
AACACTTTGGGAACTCTTGAATATGCCAGTCCCACTTAACCCACCG

consensusID : consensus_3458#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 120
fasta sequence

                              [ACACAGCAGAAGATGGGTGGAGACACTTTGGGAACTATTGAATATGCCAGTCCCACTTAACCCACCGGACATCAAAGCAGCACACACAGACCCACCTATAAATGTCACTCCACCGACGAT]

[+] EMBL CD149431             [ACACAGCAGAAGATGGGTGGAGACACTTTGGGAACTATTGAATATGCCAGTCCCACTTAACCCACCGGACATCAAAGCAGCACACACAGACCCACCTATAAATGTCACTCCACCGACGAT]




>consensus_3458#1
ACACAGCAGAAGATGGGTGGAGACACTTTGGGAACTATTGAATATGCCAGTCCCACTTAA
CCCACCGGACATCAAAGCAGCACACACAGACCCACCTATAAATGTCACTCCACCGACGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3458#0      AGAAATACGTGGAAGACCTAGCAACGACAGAGGAAAAAGTTGCAAGAGGAGGAAATATCA 60
consensus_3458#1      ------------------------------------------------------------
                                                                                  

consensus_3458#0      GACAACTATATGACACAGCGAAGAAACTGGGAGGGAAATATAGTAAACCAGAGACACCGG 120
consensus_3458#1      ------------ACACAGC-AGAAGATGGGTGGAGACACTTTGGGAACTATTGA-ATATG 46
                                  ******* *  * *  **  * ** *  * *  *** *  ** *   *

consensus_3458#0      TCAAGTACAATGAAGGTAAGCCAATCACTGAGATT-CAAGAACAGAGCAAAAGATGGGTA 179
consensus_3458#1      CCAGTCCCACTTAACCCA--CCGGACATCAAAGCAGCACACACAGACCCACCTATAAATG 104
                       **    ** * **   *  **   **   *     **   ***** * *   **   * 

consensus_3458#0      GAACACTTTGGGAACTCTTGAATATGCCAGTCCCACTTAACCCACCG 226
consensus_3458#1      TCACTCCACCGACGAT------------------------------- 120
                        ** *    *    *