These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3510#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [TATAGCACTAGTTTCAAACTGTCTCCATGGGACTGAAAAAGAAATATACTTCTCCCTAGTCAAGAAATGTCTACAGCTCAAATACAGATCCCGGCAATCTGACAGTTCACCAGTTCCGTCTAACAAACAGTATGCTCAATCAAAGACGGAAAACATAAGAATATCTTGAATCTGAACATCAATATTTTCGTTATTACGCTCATCATCACAAGCTGAAAAAACTTCTGTTTCCAACAGAGTTTCAAAAGTCGATTTTGTGGGATCCGATGTTGAATACGAGTTATCCTAACAACATAAGTGATTCCTGTTCAATTTCCGTAGAAGATACTAAACTTCTATTGATTTCCAGCATACCTAAGTTTTACCATGCTTCTAATTTAAGGAATTTTTTCTCACAATTCGTTGAGGCATCTAAATTTTCATGTTTTCACTACCGTCATAGACCAGATATCGTGGGTGTAGAATCAACTACCGAAATAGATGGAACCCAGTTCCTTAAGTCCATCAAACTAGTTACCAAAAACAAAGCAACGTGCTGTGCTATTTTGTCTATCTACGCGAAATATATCGAAGAGTTTTTTCGTACATATAGTGGTCTTAATTGGCCTAATGAGAATGATGATGTGCCTTTGGA] [+] EMBL CD178420 [TATAGCACTAGTTTCAAACTGTCTCCATGGGACTGAAAAAGAAATATACTTCTCCCTAGTCAAGAAATGTCTACAGCTCAAATACAGATCCCGGCAATCTGACAGTTCACCAGTTCCGTCTAACAAACAGTATGCTCAATCAAAGACGGAAAACATAAGAATATCTTGAATCTGAACATCAATATTTTCGTTATTACGCTCATCATCACAAGCTGAAAAAACTTCTGTTTCCAACAGAGTTTCAAAAGTCGATTTTGTGGGATCCGATGTTGAATACGAGTTATCCTAACAACATAAGTGATTCCTGTTCAATTTCCGTAGAAGATACTAAACTTCTATTGATTTCCAGCATACCTAAGTTTTACCATGCTTCTAATTTAAGGAATTTTTTCTCACAATTCGTTGAGGCATCTAAATTTTCATGTTTTCACTACCGTCATAGACCAGATATCGTGGGTGTAGAATCAACTACCGAAATAGATGGAACCCAGTTCCTTAAGTCCATCAAACTAGTTACCAAAAACAAAGCAACGTGCTGTGCTATTTTGTCTATCTACGCGAAATATATCGAAGAGTTTTTTCGTACATATAGTGGTCTTAATTGGCCTAATGAGAATGATGATGTGCCTTTGGA] consensusID : consensus_3510#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [CCGTCTAACAAACAGTATGCTCAATCAAAGACGGAAAACTAAATATTNTNNGGATTTCAACANNCAATTTTTCGTTTTCCCCCCTAACACANAAATTCATTTTTTTTTGAAAAAAAANNNNNNNGNNNNNNGTGGGTGGGGGCCGTTNNNNATATATATAATTTTTACAAACAATAATGTCTGGTNNNTGTTATCTTTCCGGAGAAGATACTAAACTTCTATTGATTTCCAGCATACCTTAGTTTTACCATGCTTCTAATTTAAGGAATTTTTTCTCACAATTCGTTGAGGCATCTAAATTTTCATGTTTTCACTACCGTCATAGACCANA] [+] EMBL CD119790 [CCGTCTAACAAACAGTATGCTCAATCAAAGACGGAAAACTAAATATTNTNNGGATTTCAACANNCAATTTTTCGTTTTCCCCCCTAACACANAAATTCATTTTTTTTTGAAAAAAAANNNNNNNGNNNNNNGTGGGTGGGGGCCGTTNNNNATATATATAATTTTTACAAACAATAATGTCTGGTNNNTGTTATCTTTCCGGAGAAGATACTAAACTTCTATTGATTTCCAGCATACCTTAGTTTTACCATGCTTCTAATTTAAGGAATTTTTTCTCACAATTCGTTGAGGCATCTAAATTTTCATGTTTTCACTACCGTCATAGACCANA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3510#0 TATAGCACTAGTTTCAAACTGTCTCCATGGGACTGAAAAAGAAATATACTTCTCCCTAGT 60 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 CAAGAAATGTCTACAGCTCAAATACAGATCCCGGCAATCTGACAGTTCACCAGTTCCGTC 120 consensus_3510#1 -------------------------------------------------------CCGTC 5 ***** consensus_3510#0 TAACAAACAGTATGCTCAATCAAAGACGGAAAACATAAGAATATCTTGAATCTGAACATC 180 consensus_3510#1 TAACAAACAGTATGCTCAATCAAAGACGGAAAAC-TAAATATTNTNNGGATTTCAACANN 64 ********************************** *** ** * ** * **** consensus_3510#0 AATATTTTCGTTATTACGCTCATCATCACAAGCTGAAAAAACTTCTGTTTCCAACAGAGT 240 consensus_3510#1 CAATTTTTCGTTTTCCCCCCTAACA-CANAAATTCAT----TTTTTTTTGAAAAAAAANN 119 * ******** * * * * ** ** ** * * ** * ** ** * * consensus_3510#0 TTCAAAAGTCGATTTTGTGGGATCCGATGTTGA---ATACGAGTTATCCTAACAACA-TA 296 consensus_3510#1 NNNNNGNNNNNNGTGGGTGGGGGCCGTTNNNNATATATATAATTTTTACAAACAATAATG 179 * ***** *** * * *** * ** * * ***** * * consensus_3510#0 AGTGATTCCTGTTCAATTTCCGTAGAAGATACTAAACTTCTATTGATTTCCAGCATACCT 356 consensus_3510#1 TCTGGTNNNTGTTATCTTTCCGGAGAAGATACTAAACTTCTATTGATTTCCAGCATACCT 239 ** * **** ****** ************************************* consensus_3510#0 AAGTTTTACCATGCTTCTAATTTAAGGAATTTTTTCTCACAATTCGTTGAGGCATCTAAA 416 consensus_3510#1 TAGTTTTACCATGCTTCTAATTTAAGGAATTTTTTCTCACAATTCGTTGAGGCATCTAAA 299 *********************************************************** consensus_3510#0 TTTTCATGTTTTCACTACCGTCATAGACCAGATATCGTGGGTGTAGAATCAACTACCGAA 476 consensus_3510#1 TTTTCATGTTTTCACTACCGTCATAGACCANA---------------------------- 331 ****************************** * consensus_3510#0 ATAGATGGAACCCAGTTCCTTAAGTCCATCAAACTAGTTACCAAAAACAAAGCAACGTGC 536 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 TGTGCTATTTTGTCTATCTACGCGAAATATATCGAAGAGTTTTTTCGTACATATAGTGGT 596 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 CTTAATTGGCCTAATGAGAATGATGATGTGCCTTTGGA 634 consensus_3510#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||