These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [CAGTTCCTGAAACCGGATGCCTACAAACAGTGGGAGCCCAAGGTTCGTCCTGGGTGACCGCGTACCTTTTGTATAATGGGTCAGCGAGTTAGTCTGGCGAGCGAGCTTAAGCCGGTAGGTGTAGGCGCAGCGAAAGCGAGTCTGAACAGGGCGTTCAGTTCGTCGGATTATACCCGAAACCGGGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACACGCACTGGAGGGCCGAACCGGTGCCTGTTGAAAAAGTCTCGGATGAGCTGTGGCTAGGGGTGAAAGGCCAACCAAACCCGGAGATAGCTGGTTCTCCGCGAAAGCTATTTAGGTAGCGCCTCGAGTGAATACTCCAGGGGGTAGAGCACTGGATGGGCTAGGGGGTCCCACAGACCTACCAAACCCAACCAAACTCCGAATACCTGGAAGTACTGCTCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGCAACAACCCTGACCGCCAGCTAAGGCCCCTAATTCGTGGCTAAGTGGGAAAGGATGTGGGGATCCCANAACAACCAGGATGTTGGCTTANGAGCAGCCATCATTTAAAGAAAGCGTAACAGCTCACTGGTCTAGACAAGGGTTCCTGCGC] [+] EMBL CD084627 [CAGTTCCTGAAACCGGATGCCTACAAACAGTGGGAGCCCAAGGTTCGTCCTGGGTGACCGCGTACCTTTTGTATAATGGGTCAGCGAGTTAGTCTGGCGAGCGAGCTTAAGCCGGTAGGTGTAGGCGCAGCGAAAGCGAGTCTGAACAGGGCGTTCAGTTCGTCGGATTATACCCGAAACCGGGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACACGCACTGGAGGGCCGAACCGGTGCCTGTTGAAAAAGTCTCGGATGAGCTGTGGCTAGGGGTGAAAGGCCAACCAAACCCGGAGATAGCTGGTTCTCCGCGAAAGCTATTTAGGTAGCGCCTCGAGTGAATACTCCAGGGGGTAGAGCACTGGATGGGCTAGGGGGTCCCACAGACCTACCAAACCCAACCAAACTCCGAATACCTGGAAGTACTGCTCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGCAACAACCCTGACCGCCAGCTAAGGCCCCTAATTCGTGGCTAAGTGGGAAAGGATGTGGGGATCCCANAACAACCAGGATGTTGGCTTANGAGCAGCCATCATTTAAAGAAAGCGTAACAGCTCACTGGTCTAGACAAGGGTTCCTGCGC] consensusID : consensus_356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [GAAGAGGCCAGGCAACTTCTACGATCCGTCACTATCCACTAGCCCAGGAATATTAACCTGGTTGCCATCGGTTACGCCTCTCGGCCCCACCTTAGGATCCGGCTCACCCTCCTCAGATTAACTTTAAGGAGGAACCCTTGGTCTTTCGGCGACAGTGTCTCTCACACTGTTAGTCGTTACTCATGTCAGCATTCGCACTTCCGATATCTCCAACAGTCCTCACGGATCTGCCTTCACAGACTTACGGAACGTTCCGCTACCGCGCATCTTGCGATGCACCCTAAGCTTCGGTGTATGACTTAACTCCCGATACATTTTCGGCGCAGAAACCCTTATTTAGACCAGTGAGCTGTTACGCTTTCTTTAAAGGATGGCCTCT] [+] EMBL CD086833 [GAAGAGGCCAGGCAACTTCTACGATCCGTCACTATCCACTAGCCCAGGAATATTAACCTGGTTGCCATCGGTTACGCCTCTCGGCCCCACCTTAGGATCCGGCTCACCCTCCTCAGATTAACTTTAAGGAGGAACCCTTGGTCTTTCGGCGACAGTGTCTCTCACACTGTTAGTCGTTACTCATGTCAGCATTCGCACTTCCGATATCTCCAACAGTCCTCACGGATCTGCCTTCACAGACTTACGGAACGTTCCGCTACCGCGCATCTTGCGATGCACCCTAAGCTTCGGTGTATGACTTAACTCCCGATACATTTTCGGCGCAGAAACCCTTATTTAGACCAGTGAGCTGTTACGCTTTCTTTAAAGGATGGCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_356#0 CAGTTCCTGAAACCGGATGCCTACAAACAGTGGGAGCCCAAGGTTCGTCCTGGGTGACCG 60 consensus_356#1 ------------------------------------------------------------ consensus_356#0 CGTACCTTTTGTATAATGGGTCAGCGAGTTAGTCTGGCGAGCGAGCTTAAGCCGGTAGGT 120 consensus_356#1 ------------------------------------------------------------ consensus_356#0 GTAGGCGCAGCGAAAGCGAGTCTGAACAGGGCGTTCAGTTCGTCGGATTATACCCGAAAC 180 consensus_356#1 ----------------------------------------------------GAAGAGGC 8 ** * consensus_356#0 CGGGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACACGCACTGGAGGGCCGAACCG 240 consensus_356#1 CAGGCAACTT--CTACGATCCG--TCACTATCCACTA----GCCCAGGAATATTAACCTG 60 * ** * * * * * * * * * * * ** ** * *** * * * consensus_356#0 GTGCCTGTTGAAAAAGTCTCGGATGAGCTGTGGCTAGGGGTGAAAGGCCAACCAAACCCG 300 consensus_356#1 GTTGCCATCGGTTACGCCTC---TCGGCCCCACCTTAGGATC--CGGCTCACCCTCCTCA 115 ** * * * * * *** * ** ** ** * *** *** * * consensus_356#0 GAGATAGCTGGTTCTCCGCGAAAGCTATTTAGGTAGCGCCTCGAGTGAATACTCCAGGGG 360 consensus_356#1 GA-----TTAACTTTAAGGAGGAACCCTT--GGTCTTTCGGCGACAGTGTCTCTCACACT 168 ** * * * * * * ** *** * *** * * ** consensus_356#0 GTAGAGCACTGGATGGGCTAGGGGGTCCCACAGACCTACCAAACCCAACCAAACTCCGAA 420 consensus_356#1 GTTAGTCGTTACTCATGTCAGCA---TTCGCACTTCCGATATCTCCAAC-AGTCCTCACG 224 ** * * * ** * ** * * ***** * * * consensus_356#0 TACCTGGAAGTACTG-CTCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGG 479 consensus_356#1 GATCTGCCTTCACAGACTTACGGAACGTTC------CGCTACCGCGCATCTTGCGATGCA 278 * *** ** * ** * ** * **** ** * ** ** * consensus_356#0 CAACAACCCTGACCGCCAGCTAAGGCCCCTAATTCGTGGCTAA-GTGGGAAAGGATGTGG 538 consensus_356#1 CCCTAAGCTTCGGTGTATGACTTAACTCCCGATACATTTTCGGCGCAGAAACCCTTATTT 338 * ** * * * * * ** ** * * * * ** * * consensus_356#0 GGATCCCANAACAACCAGGATGTTGGCTTANGAGCAGCCATCATTTAAAGAAAGCGTAAC 598 consensus_356#1 AGACCAGTGAGCTGTTACGCT-TTCTTTAAAGGATGGCCTCT------------------ 379 ** * * * * * * ** * * * *** consensus_356#0 AGCTCACTGGTCTAGACAAGGGTTCCTGCGC 629 consensus_356#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||