cluster # 3603

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Schistosoma mansoni
cluster # 3603 cluster # 3603 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3603#0 length = 458 sequences # 1

consensus_3603#1 length = 151 sequences # 1

consensusID : consensus_3603#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 458
fasta sequence

                              [GAGTGGGGTGCAGGAGTGGACGCCATGCAAGTGGCCCTCCAGTTGGAGAAAAGTGTCAACCAGTCCATCCTGGATCTGCACAAACTCGCCTCAAGCCATGAAGATGCCCAGATGGCTGACTACCTGGAAGACTTCTTAGAGGAGCAGGTCAGGTCAATCAAAGAGATTAGTGACTACATCACTAACTTGAAGCGTGTTGGCACAGGTCTGGGCGAGTACATGTTTGACAAGGAGTCACTCAGCTAGACACTCCAGGAAGGACACTCCCCCATGATGGACCTTTCTTCAAGCACCCTCATGGGTGGACCGTTATCTAGTTCAGAAACATCCTGGCCTTTTAATTAGATATTTTATGTCAAGTCTTTTAAGCTTCAACTGAATGTCAAAAAAAAAAAACTTTGTTTCTTAACAATANGAAGAAATGCTAAATTNTANCANTACACTAAAATATAAACATA]

[+] EMBL CD134595             [GAGTGGGGTGCAGGAGTGGACGCCATGCAAGTGGCCCTCCAGTTGGAGAAAAGTGTCAACCAGTCCATCCTGGATCTGCACAAACTCGCCTCAAGCCATGAAGATGCCCAGATGGCTGACTACCTGGAAGACTTCTTAGAGGAGCAGGTCAGGTCAATCAAAGAGATTAGTGACTACATCACTAACTTGAAGCGTGTTGGCACAGGTCTGGGCGAGTACATGTTTGACAAGGAGTCACTCAGCTAGACACTCCAGGAAGGACACTCCCCCATGATGGACCTTTCTTCAAGCACCCTCATGGGTGGACCGTTATCTAGTTCAGAAACATCCTGGCCTTTTAATTAGATATTTTATGTCAAGTCTTTTAAGCTTCAACTGAATGTCAAAAAAAAAAAACTTTGTTTCTTAACAATANGAAGAAATGCTAAATTNTANCANTACACTAAAATATAAACATA]




>consensus_3603#0
GAGTGGGGTGCAGGAGTGGACGCCATGCAAGTGGCCCTCCAGTTGGAGAAAAGTGTCAAC
CAGTCCATCCTGGATCTGCACAAACTCGCCTCAAGCCATGAAGATGCCCAGATGGCTGAC
TACCTGGAAGACTTCTTAGAGGAGCAGGTCAGGTCAATCAAAGAGATTAGTGACTACATC
ACTAACTTGAAGCGTGTTGGCACAGGTCTGGGCGAGTACATGTTTGACAAGGAGTCACTC
AGCTAGACACTCCAGGAAGGACACTCCCCCATGATGGACCTTTCTTCAAGCACCCTCATG
GGTGGACCGTTATCTAGTTCAGAAACATCCTGGCCTTTTAATTAGATATTTTATGTCAAG
TCTTTTAAGCTTCAACTGAATGTCAAAAAAAAAAAACTTTGTTTCTTAACAATANGAAGA
AATGCTAAATTNTANCANTACACTAAAATATAAACATA

consensusID : consensus_3603#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 151
fasta sequence

                              [GCCTTTTAAATAGAAATTTTATGTCCAGTTTTTTAAGCTTCCACTGAAAGTCCAAAAAAAAAAACTTTGTTTCTTAACAATAGGAAGAAATGCTAAATTTTAGCAATACACTAGAATATAAACATATGTAGATATAACGTTAGAATGTCAT]

[-] EMBL CD135686             [GCCTTTTAAATAGAAATTTTATGTCCAGTTTTTTAAGCTTCCACTGAAAGTCCAAAAAAAAAAACTTTGTTTCTTAACAATAGGAAGAAATGCTAAATTTTAGCAATACACTAGAATATAAACATATGTAGATATAACGTTAGAATGTCAT]




>consensus_3603#1
GCCTTTTAAATAGAAATTTTATGTCCAGTTTTTTAAGCTTCCACTGAAAGTCCAAAAAAA
AAAACTTTGTTTCTTAACAATAGGAAGAAATGCTAAATTTTAGCAATACACTAGAATATA
AACATATGTAGATATAACGTTAGAATGTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3603#0      GAGTGGGGTGCAGGAGTGGACGCCATGCAAGTGGCCCTCCAGTTGGAGAAAAGTGTCAAC 60
consensus_3603#1      ------------------------------------------------------------
                                                                                  

consensus_3603#0      CAGTCCATCCTGGATCTGCACAAACTCGCCTCAAGCCATGAAGATGCCCAGATGGCTGAC 120
consensus_3603#1      ------------------------------------------------------------
                                                                                  

consensus_3603#0      TACCTGGAAGACTTCTTAGAGGAGCAGGTCAGGTCAATCAAAGAGATTAGTGACTACATC 180
consensus_3603#1      ------------------------------------------------------------
                                                                                  

consensus_3603#0      ACTAACTTGAAGCGTGTTGGCACAGGTCTGGGCGAGTACATGTTTGACAAGGAGTCACTC 240
consensus_3603#1      ------------------------------------------------------------
                                                                                  

consensus_3603#0      AGCTAGACACTCCAGGAAGGACACTCCCCCATGATGGACCTTTCTTCAAGCACCCTCATG 300
consensus_3603#1      ------------------------------------------------------------
                                                                                  

consensus_3603#0      GGTGGACCGTTATCTAGTTCAGAAACATCCTGGCCTTTTAATTAGATATTTTATGTCAAG 360
consensus_3603#1      --------------------------------GCCTTTTAAATAGAAATTTTATGTCCAG 28
                                                      ********* **** ********** **

consensus_3603#0      TCTTTTAAGCTTCAACTGAATGTCAAAAAAAAAAAACTTTGTTTCTTAACAATANGAAGA 420
consensus_3603#1      TTTTTTAAGCTTCCACTGAAAGTCCAAAAAAAAAAACTTTGTTTCTTAACAATAGGAAGA 88
                      * *********** ****** *** ***************************** *****

consensus_3603#0      AATGCTAAATTNTANCANTACACTAAAATATAAACATA---------------------- 458
consensus_3603#1      AATGCTAAATTTTAGCAATACACTAGAATATAAACATATGTAGATATAACGTTAGAATGT 148
                      *********** ** ** ******* ************                      

consensus_3603#0      ---
consensus_3603#1      CAT 151