cluster # 363

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Schistosoma mansoni
cluster # 363 cluster # 363 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_363#0 length = 547 sequences # 1

consensus_363#1 length = 220 sequences # 1

consensusID : consensus_363#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence

                              [CCTACACTAGTCAGCATAGCGCGTCGTGGTAATCAGTGTTCAGGCATACGTAACATGTGGCCTAACCATCTCAGTCATTGTAGATTCATGACCTCATCAACTGATTTACCATCATTCCCTAATACCCTGTGTCTAACCTCACTATTACTTACCCGGTGATCCCAGAAGATGCGAGCAATATTTACTACTTAAACATTACCAAAATCTGTTTTTCTCAGGACAAGTTTCAATGACTTCTGGGTTGTATACTATATAATCTCTATAACAATGACTAATATAGTTTGATTTAAAAAGTACGTTTCCAAACATTGGTACAACCCTTCACTTTTATTGTAAGCAGAATAAACATACGTTGGAATCCGTCCAGCAGTGATTTACATTGAACAGTTTTTGTAAATGAGTACATCTTAGACAACAAATCCAAATGCAAAAAGTCTGAAGTTGACCCTTTAAGAAAGCATAGACTTAAAAGAAACCTAATCTTTTGCTTCAAAATCCCTAATAAACTATCTTTTACATTGACTGTTGAAATCCGATATGCANAAAT]

[+] EMBL CD156125             [CCTACACTAGTCAGCATAGCGCGTCGTGGTAATCAGTGTTCAGGCATACGTAACATGTGGCCTAACCATCTCAGTCATTGTAGATTCATGACCTCATCAACTGATTTACCATCATTCCCTAATACCCTGTGTCTAACCTCACTATTACTTACCCGGTGATCCCAGAAGATGCGAGCAATATTTACTACTTAAACATTACCAAAATCTGTTTTTCTCAGGACAAGTTTCAATGACTTCTGGGTTGTATACTATATAATCTCTATAACAATGACTAATATAGTTTGATTTAAAAAGTACGTTTCCAAACATTGGTACAACCCTTCACTTTTATTGTAAGCAGAATAAACATACGTTGGAATCCGTCCAGCAGTGATTTACATTGAACAGTTTTTGTAAATGAGTACATCTTAGACAACAAATCCAAATGCAAAAAGTCTGAAGTTGACCCTTTAAGAAAGCATAGACTTAAAAGAAACCTAATCTTTTGCTTCAAAATCCCTAATAAACTATCTTTTACATTGACTGTTGAAATCCGATATGCANAAAT]




>consensus_363#0
CCTACACTAGTCAGCATAGCGCGTCGTGGTAATCAGTGTTCAGGCATACGTAACATGTGG
CCTAACCATCTCAGTCATTGTAGATTCATGACCTCATCAACTGATTTACCATCATTCCCT
AATACCCTGTGTCTAACCTCACTATTACTTACCCGGTGATCCCAGAAGATGCGAGCAATA
TTTACTACTTAAACATTACCAAAATCTGTTTTTCTCAGGACAAGTTTCAATGACTTCTGG
GTTGTATACTATATAATCTCTATAACAATGACTAATATAGTTTGATTTAAAAAGTACGTT
TCCAAACATTGGTACAACCCTTCACTTTTATTGTAAGCAGAATAAACATACGTTGGAATC
CGTCCAGCAGTGATTTACATTGAACAGTTTTTGTAAATGAGTACATCTTAGACAACAAAT
CCAAATGCAAAAAGTCTGAAGTTGACCCTTTAAGAAAGCATAGACTTAAAAGAAACCTAA
TCTTTTGCTTCAAAATCCCTAATAAACTATCTTTTACATTGACTGTTGAAATCCGATATG
CANAAAT

consensusID : consensus_363#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence

                              [GTCATATAACCTACAGTCTCCAACCATTGGTTAGAATAGTTACGCGGACCCTAACCACGTACTCTGCATCTACCAACATGGCTCAGAATAGAAGTTAGTGACTTGGTGGACTGATACCACCCTTTTGGTTTGGTCGCCCTTTATTCTCCACCAACCATCGCCAATACTAGTCAGGATTGCGCGTCGTGGTAATCGGTGTCCAGGCATACGTAACGCGTGA]

[+] EMBL BG930903             [GTCATATAACCTACAGTCTCCAACCATTGGTTAGAATAGTTACGCGGACCCTAACCACGTACTCTGCATCTACCAACATGGCTCAGAATAGAAGTTAGTGACTTGGTGGACTGATACCACCCTTTTGGTTTGGTCGCCCTTTATTCTCCACCAACCATCGCCAATACTAGTCAGGATTGCGCGTCGTGGTAATCGGTGTCCAGGCATACGTAACGCGTGA]




>consensus_363#1
GTCATATAACCTACAGTCTCCAACCATTGGTTAGAATAGTTACGCGGACCCTAACCACGT
ACTCTGCATCTACCAACATGGCTCAGAATAGAAGTTAGTGACTTGGTGGACTGATACCAC
CCTTTTGGTTTGGTCGCCCTTTATTCTCCACCAACCATCGCCAATACTAGTCAGGATTGC
GCGTCGTGGTAATCGGTGTCCAGGCATACGTAACGCGTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_363#0      CCTACACTAGTCAGCATAGCGCGTCGTGGTAATCAGTGTTCAGGCATACGTAACATGTGG 60
consensus_363#1      ------------------------------------------------------------
                                                                                 

consensus_363#0      CCTAACCATCTCAGTCATTGTAGATTCATGACCTCATCAACTGATTTACCATCATTCCCT 120
consensus_363#1      -----------------------------------------------------GTCATAT 7
                                                                           *    *

consensus_363#0      AATACCCTGTGTCTAACC-TCACTATTACTTACCCGGTGATCCCAGAAGATGCGAGCAAT 179
consensus_363#1      AACCTACAGTCTCCAACCATTGGTTAGAATAGTTACGCGGACCCTAACCACGTACTCTGC 67
                     **    * ** ** **** *   *   * *      * *  ***  *  * *    *   

consensus_363#0      ATTTACTACTTAAAC--ATTACCAAAATCTGTTTTTCTCAGGACAAGTTTCAATGACTTC 237
consensus_363#1      ATCTACCAACATGGCTCAGAATAGAAGTTAGTGACTTGGTGGACTGATACCACC--CTTT 125
                     ** *** *      *  *  *   ** *  **   *    ****   *  **    *** 

consensus_363#0      TGGGTTGTATACTATATAATCTCTAT-AACAATGACTAATATAGTTTGATTTAAAAAGTA 296
consensus_363#1      TGGTTTGGTCGCCCTTTATTCTCCACCAACCATCGCCAATA----CTAGTCAGGATTGCG 181
                     *** ***    *  * ** **** *  *** **  * ****     *  *    *  *  

consensus_363#0      CGTTTCCAAACATTGGTACAACCCTTCACTTTTATTGTAAGCAGAATAAACATACGTTGG 356
consensus_363#1      CGTCGTGGTA-ATCGGTGT--CCAGGCATACGTAACGCGTGA------------------ 220
                     ***      * ** ***    **   **    **  *   *                   

consensus_363#0      AATCCGTCCAGCAGTGATTTACATTGAACAGTTTTTGTAAATGAGTACATCTTAGACAAC 416
consensus_363#1      ------------------------------------------------------------
                                                                                 

consensus_363#0      AAATCCAAATGCAAAAAGTCTGAAGTTGACCCTTTAAGAAAGCATAGACTTAAAAGAAAC 476
consensus_363#1      ------------------------------------------------------------
                                                                                 

consensus_363#0      CTAATCTTTTGCTTCAAAATCCCTAATAAACTATCTTTTACATTGACTGTTGAAATCCGA 536
consensus_363#1      ------------------------------------------------------------
                                                                                 

consensus_363#0      TATGCANAAAT 547
consensus_363#1      -----------