cluster # 3642

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Schistosoma mansoni
cluster # 3642 cluster # 3642 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3642#0 length = 611 sequences # 1

consensus_3642#1 length = 369 sequences # 1

consensusID : consensus_3642#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence

                              [GACCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAACTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTCTCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGGGATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCTTCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGTCACAAGTATTGGGAACGATATTTGTCGTCTATGAAGGGTAAACATAGTGGAACATTCTTTTACCTCAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCGGTCGCCACTGATGTAGCTTCTCTATTTGCCAGAGTTCTTTTTAAATTTGTGTCGACTCGTTTTAACGCGTTTCTGTAGGAGGAATCTTTGCTTAAAATATTCTCAAGACATTTCATAATACCATCCAAACAACATNTGTGGACGTCTTCGAATAAGTTNTGTTATCCGAGTAATCAGGGACAGGACACTGTGAGCGTAAATGTTG]

[+] EMBL CD155801             [GACCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAACTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTCTCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGGGATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCTTCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGTCACAAGTATTGGGAACGATATTTGTCGTCTATGAAGGGTAAACATAGTGGAACATTCTTTTACCTCAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCGGTCGCCACTGATGTAGCTTCTCTATTTGCCAGAGTTCTTTTTAAATTTGTGTCGACTCGTTTTAACGCGTTTCTGTAGGAGGAATCTTTGCTTAAAATATTCTCAAGACATTTCATAATACCATCCAAACAACATNTGTGGACGTCTTCGAATAAGTTNTGTTATCCGAGTAATCAGGGACAGGACACTGTGAGCGTAAATGTTG]




>consensus_3642#0
GACCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAA
CTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTC
TCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGG
GATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCT
TCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGT
CACAAGTATTGGGAACGATATTTGTCGTCTATGAAGGGTAAACATAGTGGAACATTCTTT
TACCTCAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCGGTCGCCACTGATGT
AGCTTCTCTATTTGCCAGAGTTCTTTTTAAATTTGTGTCGACTCGTTTTAACGCGTTTCT
GTAGGAGGAATCTTTGCTTAAAATATTCTCAAGACATTTCATAATACCATCCAAACAACA
TNTGTGGACGTCTTCGAATAAGTTNTGTTATCCGAGTAATCAGGGACAGGACACTGTGAG
CGTAAATGTTG

consensusID : consensus_3642#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [CCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAACTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTCTCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGGGATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCTTCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGTCACAAGTATTGGGAACGATATTTGTCGTCTCAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCG]

[-] EMBL CD134885             [CCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAACTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTCTCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGGGATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCTTCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGTCACAAGTATTGGGAACGATATTTGTCGTCTCAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCG]




>consensus_3642#1
CCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAACT
ACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTCTC
TTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGGGA
TTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCTTC
GGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGTCA
CAAGTATTGGGAACGATATTTGTCGTCTCAGGTGACGATTCTGTACATAGCGTGGGAACC
TGTTCATCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3642#0      GACCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAA 60
consensus_3642#1      --CCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAA 58
                        **********************************************************

consensus_3642#0      CTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTC 120
consensus_3642#1      CTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTC 118
                      ************************************************************

consensus_3642#0      TCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGG 180
consensus_3642#1      TCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGG 178
                      ************************************************************

consensus_3642#0      GATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCT 240
consensus_3642#1      GATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCT 238
                      ************************************************************

consensus_3642#0      TCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGT 300
consensus_3642#1      TCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGT 298
                      ************************************************************

consensus_3642#0      CACAAGTATTGGGAACGATATTTGTCGTCTATGAAGGGTAAACATAGTGGAACATTCTTT 360
consensus_3642#1      CACAAGTATTGGGAACGATATTTGTCGTCT------------------------------ 328
                      ******************************                              

consensus_3642#0      TACCTCAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCGGTCGCCACTGATGT 420
consensus_3642#1      -----CAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCG-------------- 369
                           *****************************************              

consensus_3642#0      AGCTTCTCTATTTGCCAGAGTTCTTTTTAAATTTGTGTCGACTCGTTTTAACGCGTTTCT 480
consensus_3642#1      ------------------------------------------------------------
                                                                                  

consensus_3642#0      GTAGGAGGAATCTTTGCTTAAAATATTCTCAAGACATTTCATAATACCATCCAAACAACA 540
consensus_3642#1      ------------------------------------------------------------
                                                                                  

consensus_3642#0      TNTGTGGACGTCTTCGAATAAGTTNTGTTATCCGAGTAATCAGGGACAGGACACTGTGAG 600
consensus_3642#1      ------------------------------------------------------------
                                                                                  

consensus_3642#0      CGTAAATGTTG 611
consensus_3642#1      -----------