These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3653#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [TCATCCCGACTAGCATCCTCCTTTATAAGGTTTGCTTATGATCAAGATTTCCTCATTTCTTAGTTTAGTTAAAGAGTGTCGGTGCTGCTTGGTAAGTAGGCGGTTTGTAGTACTCTTACTATTCTTGTATTGTTGGCTGCTGTCAACTAAAGTGGTCTTAAACTTATATAGCTATCTCCACAGGAGCAGCTGAACTTATAAATGCACATGGAGGAGGCCAACTCAGGTAACTTATTCTTCGTTTGAGTAGACATCACTGGTCGACTCCAGAAAGTCAATGCGAGATAGGCTGCGTAGAAAGTTCTACTAATTACTTTTGTTAACCTATCTTTCAGAGTTTCACTAGCTACATCCCCGTTGAATGGTAATTTCATGTCTAAAGGTTTCTTACGAACAGTTGAAATCTCCGACTTCTTCCTTGTATCATACATGTACTTTTTACTGAACGCAGCAGCGTAGCCGATCTCTGTCAGTGGGTTATAGATAAATTGCAGTTCCTGACTTAAAGTATCAACAGAACAGATCTTATTTGCTCTACTAGTGAGACATCT] [+] EMBL CD150595 [TCATCCCGACTAGCATCCTCCTTTATAAGGTTTGCTTATGATCAAGATTTCCTCATTTCTTAGTTTAGTTAAAGAGTGTCGGTGCTGCTTGGTAAGTAGGCGGTTTGTAGTACTCTTACTATTCTTGTATTGTTGGCTGCTGTCAACTAAAGTGGTCTTAAACTTATATAGCTATCTCCACAGGAGCAGCTGAACTTATAAATGCACATGGAGGAGGCCAACTCAGGTAACTTATTCTTCGTTTGAGTAGACATCACTGGTCGACTCCAGAAAGTCAATGCGAGATAGGCTGCGTAGAAAGTTCTACTAATTACTTTTGTTAACCTATCTTTCAGAGTTTCACTAGCTACATCCCCGTTGAATGGTAATTTCATGTCTAAAGGTTTCTTACGAACAGTTGAAATCTCCGACTTCTTCCTTGTATCATACATGTACTTTTTACTGAACGCAGCAGCGTAGCCGATCTCTGTCAGTGGGTTATAGATAAATTGCAGTTCCTGACTTAAAGTATCAACAGAACAGATCTTATTTGCTCTACTAGTGAGACATCT] consensusID : consensus_3653#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [TTTCGGGCACGGGGGACTGGTAGCCGATCTCAGTCAGTAAGTTATAGATAAATTCCAGTTCCTGACTTAAAGTATCAACAGAACAGATCTTATTTGCTCTACTAGTGAGGCATTTAACCAAGTTTCTCTTATATTGGATAGGTGTAAAGCTATAGAAGTGAGTGTATTGGCAGGCAGAGGGTCTTTTTCTATACACGCTTCTACTTAACGAGCCATCACTTCGCCTGCTTAGTGTAACGTCAAGGAAATTCAGCTTCATGTCACACTCGCCTTCACCAGTGAAGCTAATCGCTGGATGTACACTGTTGAACTGTTCAAGTAGTTCATCCTTACTGGTGTTCTGATCCACGACTATGAATGTATCGTCGATGTAGCGGCAGTATAGATCGAGCTTCTTAATAGCCTCCTTAAGTGGGCCATTTTCTAGCTTAGCTAAGAAGAGATCAGCAAGAATCGGGCCTAGAGGGGACGCCCAAGGCAACTCCGGCTATTTGCCCAAAAAAGGATTGTTGAGACGAATGAACATTCAGGTTACTCTAAAAGCGTTC] [+] EMBL AI739718 [TTTCGGGCACGGGGGACTGGTAGCCGATCTCAGTCAGTAAGTTATAGATAAATTCCAGTTCCTGACTTAAAGTATCAACAGAACAGATCTTATTTGCTCTACTAGTGAGGCATTTAACCAAGTTTCTCTTATATTGGATAGGTGTAAAGCTATAGAAGTGAGTGTATTGGCAGGCAGAGGGTCTTTTTCTATACACGCTTCTACTTAACGAGCCATCACTTCGCCTGCTTAGTGTAACGTCAAGGAAATTCAGCTTCATGTCACACTCGCCTTCACCAGTGAAGCTAATCGCTGGATGTACACTGTTGAACTGTTCAAGTAGTTCATCCTTACTGGTGTTCTGATCCACGACTATGAATGTATCGTCGATGTAGCGGCAGTATAGATCGAGCTTCTTAATAGCCTCCTTAAGTGGGCCATTTTCTAGCTTAGCTAAGAAGAGATCAGCAAGAATCGGGCCTAGAGGGGACGCCCAAGGCAACTCCGGCTATTTGCCCAAAAAAGGATTGTTGAGACGAATGAACATTCAGGTTACTCTAAAAGCGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3653#0 ------TCATCCCG-ACTAGCATCCTCCTTTATAAGGTTTGCTTATGATCAAGATTTCCT 53 consensus_3653#1 TTTCGGGCACGGGGGACTGGTAGCCGATCTCAGTCAGTAAGTTATAGATAAATTCCAGTT 60 ** * *** * * ** * * ** * * *** ** * consensus_3653#0 CATTTCTTAGTTTAGTTAAAGAGTG--TCGGTGCTGCTTGGTAAGTAGGCGGTTTGTAGT 111 consensus_3653#1 CCTGACTTAAAGTATCAACAGAACAGATCTTATTTGCTCTACTAGTGAGGCATTTAACCA 120 * * **** ** * *** ** **** *** * *** consensus_3653#0 ACTCTTACTATTCTTGTATTGTTG-GCTGCTGTCAACTAAAGTGGTCTTAAACTTATATA 170 consensus_3653#1 AGTTTCTCTTATATTGGATAGGTGTAAAGCTATAGAAGTGAGTGTATTGGCAGGCAGAGG 180 * * * ** * *** ** * ** *** * * **** * * * * consensus_3653#0 G-CTATCTCCACAGGAGCAGCTGAACTTATAAATGCACATGGAGGAGGCCAACTCAG-GT 228 consensus_3653#1 GTCTTTTTCTATACACGCTTCT--ACTT---AACGAGCCATCACTTCGCCTGCTTAGTGT 235 * ** * ** * * ** ** **** ** * * * *** ** ** ** consensus_3653#0 AACTTATTCTTCGTTTGAGTAGACATCACTGGTCGACTCCAGAAAGTCAATGCGAGATAG 288 consensus_3653#1 AACGTCAAGGAAATTCAGCTTCATGTCAC-ACTCGCCTTCACCA-------GTGAAGCTA 287 *** * ** * * **** *** ** ** * * ** consensus_3653#0 GCTGCGTAGAAAGTTCTACTAATTACTTTTGTTAACCTATCTTTCAGAGTTTCACTAGCT 348 consensus_3653#1 ATCGCTGGATGTACACTGTTGAACTGTTCAAGTAGTTCATCCTTACTGGTGTTCTGATCC 347 ** ** * * ** ** *** ** ** * * * consensus_3653#0 ACATCCCCGTTGAATGGTAATTTCATGTCTAAAGGTTTCTTACGAACAGTTGAAATCTCC 408 consensus_3653#1 ACGACTA---TGAATG-TATCGTCG-ATGTAGCGGCAGTATA-----GATCGAGCTTCTT 397 ** * ****** ** ** * ** ** ** * ** * consensus_3653#0 GACTTCTTCCTTGTATCATACATGTACT--TTTTACTGAACGCAG--CAGCGTAGCCGAT 464 consensus_3653#1 AATAGCCTCCTTAAGTGGGCCATTTTCTAGCTTAGCTAAGAAGAGATCAGCAAGAATCGG 457 * * ***** * *** * ** ** ** * ** **** consensus_3653#0 CTCTGTCAGTGGGTTATAGATAAATTGCAGTTCCTGACTTAAA---GTATCAACAGAACA 521 consensus_3653#1 GCCTAGAGGGGACGCCCAAGGCAACTCCGGCTATTTGCCCAAAAAAGGATTGTTGAGACG 517 ** * * * ** * * * * * * *** * ** ** consensus_3653#0 GATCT-TATTTGCTCTACTAGTGAGACATCT 551 consensus_3653#1 AATGAACATTCAGGTTACTCTAAAAGCGTTC 548 ** *** **** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||