cluster # 3700

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Schistosoma mansoni
cluster # 3700 cluster # 3700 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3700#0 length = 572 sequences # 1

consensus_3700#1 length = 160 sequences # 1

consensusID : consensus_3700#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 572
fasta sequence

                              [CTTTATCTGTTCCTAAACGTAAAAATAACAGTTTAATTAGTACAACAACTAAATGGATTATAGTCATTAAGTGGAACGCACAAACATACCGACCAGTATTGCCTGTCTTATCGAGAAGAATAAAAATAATGAGTCACACCAATATAACAGGTTAATAATATCCTTCAATTAGCAGGTTACATGCAACAGGGATAGCCTACAGATACATCAGTCTACATCGATGTGATGGGCGTTTAAGCAAGGATTTGATTCGTTAGTTATGGACATAAATAACAATAGTTATCATCGGTTCCAGTGTCAGTAACCATGAAAGTCACCGTGCGCGGTATGTATTTCTTGTGTTTGCTTATCTTGGCTGAAAAAGTAGCGAACATTCATACACAACATAAAAATGGGGGAAACTAGGTAATAACAGTTTGTTCAGTAAAAGGAAAAGTTGTCGAATTCGGTTGTTATTTGTGGCATAATCAATATGTCAATATATACGTGTATGTACAACATAATGGATAATTTAGTATACATTGNTAAGTAATATCTTATCTGCCATCAGGTTTTCGTCGAGTTGAATCATA]

[+] EMBL CD073199             [CTTTATCTGTTCCTAAACGTAAAAATAACAGTTTAATTAGTACAACAACTAAATGGATTATAGTCATTAAGTGGAACGCACAAACATACCGACCAGTATTGCCTGTCTTATCGAGAAGAATAAAAATAATGAGTCACACCAATATAACAGGTTAATAATATCCTTCAATTAGCAGGTTACATGCAACAGGGATAGCCTACAGATACATCAGTCTACATCGATGTGATGGGCGTTTAAGCAAGGATTTGATTCGTTAGTTATGGACATAAATAACAATAGTTATCATCGGTTCCAGTGTCAGTAACCATGAAAGTCACCGTGCGCGGTATGTATTTCTTGTGTTTGCTTATCTTGGCTGAAAAAGTAGCGAACATTCATACACAACATAAAAATGGGGGAAACTAGGTAATAACAGTTTGTTCAGTAAAAGGAAAAGTTGTCGAATTCGGTTGTTATTTGTGGCATAATCAATATGTCAATATATACGTGTATGTACAACATAATGGATAATTTAGTATACATTGNTAAGTAATATCTTATCTGCCATCAGGTTTTCGTCGAGTTGAATCATA]




>consensus_3700#0
CTTTATCTGTTCCTAAACGTAAAAATAACAGTTTAATTAGTACAACAACTAAATGGATTA
TAGTCATTAAGTGGAACGCACAAACATACCGACCAGTATTGCCTGTCTTATCGAGAAGAA
TAAAAATAATGAGTCACACCAATATAACAGGTTAATAATATCCTTCAATTAGCAGGTTAC
ATGCAACAGGGATAGCCTACAGATACATCAGTCTACATCGATGTGATGGGCGTTTAAGCA
AGGATTTGATTCGTTAGTTATGGACATAAATAACAATAGTTATCATCGGTTCCAGTGTCA
GTAACCATGAAAGTCACCGTGCGCGGTATGTATTTCTTGTGTTTGCTTATCTTGGCTGAA
AAAGTAGCGAACATTCATACACAACATAAAAATGGGGGAAACTAGGTAATAACAGTTTGT
TCAGTAAAAGGAAAAGTTGTCGAATTCGGTTGTTATTTGTGGCATAATCAATATGTCAAT
ATATACGTGTATGTACAACATAATGGATAATTTAGTATACATTGNTAAGTAATATCTTAT
CTGCCATCAGGTTTTCGTCGAGTTGAATCATA

consensusID : consensus_3700#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 160
fasta sequence

                              [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACCCCAATATAACGGGTTAATAATATCCTTAAATTAGCAGGTTACATGCAACAGGGATAGTTTACAAATACATC]

[+] EMBL AI977286             [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACCCCAATATAACGGGTTAATAATATCCTTAAATTAGCAGGTTACATGCAACAGGGATAGTTTACAAATACATC]




>consensus_3700#1
TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTCACCCCAATATAACGGGTTAATAATATCCTTAAAT
TAGCAGGTTACATGCAACAGGGATAGTTTACAAATACATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3700#0      CTTTATCTGTTCCTAAACGTAAAAATAACAGTTTAATTAGTACAACAACTAAATGGATTA 60
consensus_3700#1      ----------------------------------------------TACGCAGTACGGTA 14
                                                                     **  * *    **

consensus_3700#0      TAGTCATTAAGTGGAACGCACAAACATACCGACCAGTATTGCCTGTCTTATCGAGAAGAA 120
consensus_3700#1      ATGCAGCTGCATGGCATGTTT---TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 71
                        *    *   *** * *        *         * **   * * ** *         

consensus_3700#0      TAAAAATAATGAGTCACACCAATATAACAGGTTAATAATATCCTTCAATTAGCAGGTTAC 180
consensus_3700#1      TTTTTTTTTTTTTTCACCCCAATATAACGGGTTAATAATATCCTTAAATTAGCAGGTTAC 131
                      *     *  *   **** ********** **************** **************

consensus_3700#0      ATGCAACAGGGATAGCCTACAGATACATCAGTCTACATCGATGTGATGGGCGTTTAAGCA 240
consensus_3700#1      ATGCAACAGGGATAGTTTACAAATACATC------------------------------- 160
                      ***************  **** *******                               

consensus_3700#0      AGGATTTGATTCGTTAGTTATGGACATAAATAACAATAGTTATCATCGGTTCCAGTGTCA 300
consensus_3700#1      ------------------------------------------------------------
                                                                                  

consensus_3700#0      GTAACCATGAAAGTCACCGTGCGCGGTATGTATTTCTTGTGTTTGCTTATCTTGGCTGAA 360
consensus_3700#1      ------------------------------------------------------------
                                                                                  

consensus_3700#0      AAAGTAGCGAACATTCATACACAACATAAAAATGGGGGAAACTAGGTAATAACAGTTTGT 420
consensus_3700#1      ------------------------------------------------------------
                                                                                  

consensus_3700#0      TCAGTAAAAGGAAAAGTTGTCGAATTCGGTTGTTATTTGTGGCATAATCAATATGTCAAT 480
consensus_3700#1      ------------------------------------------------------------
                                                                                  

consensus_3700#0      ATATACGTGTATGTACAACATAATGGATAATTTAGTATACATTGNTAAGTAATATCTTAT 540
consensus_3700#1      ------------------------------------------------------------
                                                                                  

consensus_3700#0      CTGCCATCAGGTTTTCGTCGAGTTGAATCATA 572
consensus_3700#1      --------------------------------