cluster # 3706

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Schistosoma mansoni
cluster # 3706 cluster # 3706 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3706#0 length = 598 sequences # 1

consensus_3706#1 length = 406 sequences # 1

consensusID : consensus_3706#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 598
fasta sequence

                              [NAAGATGCATAGGTAGGTATATAAAGAAACTTTATACGATATTTCAATATTTTTTGCACGGATTCCATGGAGTGAGTTTCTCTTACATAAGTGATTTTATTGCACCAACTACGAATGGAATAACTTTCAGAAGATATTTTTCATTACTGTTATGAGAACCGACTAATGAACCGTTTGATTTGAAACGATGAAAACCTATCAAATGCATTTATCTGAAAAATCAGTTTTATCGTCGTTTAGTATTACTTTCTTGTTAGCAGATCGTTCACTGACCTGGCAATGTCAGATGAAACATAAATCCCAGAGTTTGGTGATCGCGTATATTCAGTAGTCAGTGTACTTTCAGGAGGATGTGGGGATAATTTACTGAACGGAACGACTACTGCTGATGAACAGTAGTAGATTTGAGGTCAGCATGGTATCTATTCACTCTTCAAGTAGTGTACATGCTTCGGTGTGCCACTGTCGAACCTTGGTGGGTAGGATATATTCATATGAGTGTGTTCAATCTACGTTTTAAACTCACAATGATTATTTGTTGTCCATTGATAATTTATTTTCATTAGTAACAACTGTCTGATTGAGGTAATACCACATT]

[+] EMBL CD127272             [NAAGATGCATAGGTAGGTATATAAAGAAACTTTATACGATATTTCAATATTTTTTGCACGGATTCCATGGAGTGAGTTTCTCTTACATAAGTGATTTTATTGCACCAACTACGAATGGAATAACTTTCAGAAGATATTTTTCATTACTGTTATGAGAACCGACTAATGAACCGTTTGATTTGAAACGATGAAAACCTATCAAATGCATTTATCTGAAAAATCAGTTTTATCGTCGTTTAGTATTACTTTCTTGTTAGCAGATCGTTCACTGACCTGGCAATGTCAGATGAAACATAAATCCCAGAGTTTGGTGATCGCGTATATTCAGTAGTCAGTGTACTTTCAGGAGGATGTGGGGATAATTTACTGAACGGAACGACTACTGCTGATGAACAGTAGTAGATTTGAGGTCAGCATGGTATCTATTCACTCTTCAAGTAGTGTACATGCTTCGGTGTGCCACTGTCGAACCTTGGTGGGTAGGATATATTCATATGAGTGTGTTCAATCTACGTTTTAAACTCACAATGATTATTTGTTGTCCATTGATAATTTATTTTCATTAGTAACAACTGTCTGATTGAGGTAATACCACATT]




>consensus_3706#0
NAAGATGCATAGGTAGGTATATAAAGAAACTTTATACGATATTTCAATATTTTTTGCACG
GATTCCATGGAGTGAGTTTCTCTTACATAAGTGATTTTATTGCACCAACTACGAATGGAA
TAACTTTCAGAAGATATTTTTCATTACTGTTATGAGAACCGACTAATGAACCGTTTGATT
TGAAACGATGAAAACCTATCAAATGCATTTATCTGAAAAATCAGTTTTATCGTCGTTTAG
TATTACTTTCTTGTTAGCAGATCGTTCACTGACCTGGCAATGTCAGATGAAACATAAATC
CCAGAGTTTGGTGATCGCGTATATTCAGTAGTCAGTGTACTTTCAGGAGGATGTGGGGAT
AATTTACTGAACGGAACGACTACTGCTGATGAACAGTAGTAGATTTGAGGTCAGCATGGT
ATCTATTCACTCTTCAAGTAGTGTACATGCTTCGGTGTGCCACTGTCGAACCTTGGTGGG
TAGGATATATTCATATGAGTGTGTTCAATCTACGTTTTAAACTCACAATGATTATTTGTT
GTCCATTGATAATTTATTTTCATTAGTAACAACTGTCTGATTGAGGTAATACCACATT

consensusID : consensus_3706#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence

                              [AATTTACTGAACGGAATGACTACTGCTGATGAACAGTAATAGATTTGAGGTCAGCATGGTATCTATTCACTCTTCAAGTAGTGTATACGTTTCGGTGTGCCAATATCAAACCTAATACCTTCAAGTTTCTGGGTGAGCAGGTTATGTTCATATGAGTGAGTTTTGTCTACGGTTTCAACTTTCAAGAATTATTTACTGTCCCCTCATCATTTATTTTCATTGGTAACGACTGTCTGATTGAGATAATACCACTTCCAGTTCGCCGTCACATATTGTGTTTAGTGAATAAAGGACTCATAACTTTTCAACAACTGATATCTCTGTGTATTACAACTAGACATACATGTGGAGTGTATAACTTAAATCATGTAATAGTCAACATCATTTATTAGAAAGTAAGTCACAA]

[+] EMBL CD152357             [AATTTACTGAACGGAATGACTACTGCTGATGAACAGTAATAGATTTGAGGTCAGCATGGTATCTATTCACTCTTCAAGTAGTGTATACGTTTCGGTGTGCCAATATCAAACCTAATACCTTCAAGTTTCTGGGTGAGCAGGTTATGTTCATATGAGTGAGTTTTGTCTACGGTTTCAACTTTCAAGAATTATTTACTGTCCCCTCATCATTTATTTTCATTGGTAACGACTGTCTGATTGAGATAATACCACTTCCAGTTCGCCGTCACATATTGTGTTTAGTGAATAAAGGACTCATAACTTTTCAACAACTGATATCTCTGTGTATTACAACTAGACATACATGTGGAGTGTATAACTTAAATCATGTAATAGTCAACATCATTTATTAGAAAGTAAGTCACAA]




>consensus_3706#1
AATTTACTGAACGGAATGACTACTGCTGATGAACAGTAATAGATTTGAGGTCAGCATGGT
ATCTATTCACTCTTCAAGTAGTGTATACGTTTCGGTGTGCCAATATCAAACCTAATACCT
TCAAGTTTCTGGGTGAGCAGGTTATGTTCATATGAGTGAGTTTTGTCTACGGTTTCAACT
TTCAAGAATTATTTACTGTCCCCTCATCATTTATTTTCATTGGTAACGACTGTCTGATTG
AGATAATACCACTTCCAGTTCGCCGTCACATATTGTGTTTAGTGAATAAAGGACTCATAA
CTTTTCAACAACTGATATCTCTGTGTATTACAACTAGACATACATGTGGAGTGTATAACT
TAAATCATGTAATAGTCAACATCATTTATTAGAAAGTAAGTCACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3706#0      NAAGATGCATAGGTAGGTATATAAAGAAACTTTATACGATATTTCAATATTTTTTGCACG 60
consensus_3706#1      ------------------------------------------------------------
                                                                                  

consensus_3706#0      GATTCCATGGAGTGAGTTTCTCTTACATAAGTGATTTTATTGCACCAACTACGAATGGAA 120
consensus_3706#1      ------------------------------------------------------------
                                                                                  

consensus_3706#0      TAACTTTCAGAAGATATTTTTCATTACTGTTATGAGAACCGACTAATGAACCGTTTGATT 180
consensus_3706#1      ------------------------------------------------------------
                                                                                  

consensus_3706#0      TGAAACGATGAAAACCTATCAAATGCATTTATCTGAAAAATCAGTTTTATCGTCGTTTAG 240
consensus_3706#1      ------------------------------------------------------------
                                                                                  

consensus_3706#0      TATTACTTTCTTGTTAGCAGATCGTTCACTGACCTGGCAATGTCAGATGAAACATAAATC 300
consensus_3706#1      ------------------------------------------------------------
                                                                                  

consensus_3706#0      CCAGAGTTTGGTGATCGCGTATATTCAGTAGTCAGTGTACTTTCAGGAGGATGTGGGGAT 360
consensus_3706#1      ------------------------------------------------------------
                                                                                  

consensus_3706#0      AATTTACTGAACGGAACGACTACTGCTGATGAACAGTAGTAGATTTGAGGTCAGCATGGT 420
consensus_3706#1      AATTTACTGAACGGAATGACTACTGCTGATGAACAGTAATAGATTTGAGGTCAGCATGGT 60
                      **************** ********************* *********************

consensus_3706#0      ATCTATTCACTCTTCAAGTAGTGTACATGCTTCGGTGTGCCACTGTCGAACCTT------ 474
consensus_3706#1      ATCTATTCACTCTTCAAGTAGTGTATACGTTTCGGTGTGCCAATATCAAACCTAATACCT 120
                      ************************* * * ************ * ** *****       

consensus_3706#0      -----------GGTGGGTAGGATATATTCATATGAGTGTGTTCAATCTACGTTTTAAACT 523
consensus_3706#1      TCAAGTTTCTGGGTGAGCAGGTTATGTTCATATGAGTGAGTTTTGTCTACGGTTTCAACT 180
                                 **** * *** *** ************ ***   ****** *** ****

consensus_3706#0      CACAATGATTATTTGTTGTCCATTGATAATTTATTTTCATTAGTAACAACTGTCTGATTG 583
consensus_3706#1      TTCAAGAATTATTTACTGTCCCCTCATCATTTATTTTCATTGGTAACGACTGTCTGATTG 240
                        ***  *******  *****  * ** ************* ***** ************

consensus_3706#0      AGGTAATACCACATT--------------------------------------------- 598
consensus_3706#1      AGATAATACCACTTCCAGTTCGCCGTCACATATTGTGTTTAGTGAATAAAGGACTCATAA 300
                      ** ********* *                                              

consensus_3706#0      ------------------------------------------------------------
consensus_3706#1      CTTTTCAACAACTGATATCTCTGTGTATTACAACTAGACATACATGTGGAGTGTATAACT 360
                                                                                  

consensus_3706#0      ----------------------------------------------
consensus_3706#1      TAAATCATGTAATAGTCAACATCATTTATTAGAAAGTAAGTCACAA 406