cluster # 372

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Schistosoma mansoni
cluster # 372 cluster # 372 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_372#0 length = 422 sequences # 1

consensus_372#1 length = 395 sequences # 1

consensusID : consensus_372#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [GTTTCTTCCTCGGGACTCTTCGTACCAAATGTAAGACACAAAAGAATCACATTCTAAAAAGACCAGTACCACCGGCTGCTCCTCCCACATCTATTTCACTTCTAGAAGAAGTAAGTCCACTACCTCTTCCAAAGAAAATCAACTCTCATCCAAAAGTCATAGAACCATTTTCTTGTGACATGTCTGTCATAAACTTTCAAGATGAAGTCCCAACTACCTGTTCACCAAGATGTGGATCCTTACGCTCAACTCCTCTTGTTTCCACTCCTGTACGAAAGGTCGCGGTAAAAAGTCGTGGAGACAATAATCGGTCATTTGGTCATATCTTTGATTTACGAGAATCTGATATTTCAAGTCAAACAGCTCACGACGAACAAATGACAGTTATAAATTTCGTAAAGCAAGGGCACAATGTTTTCTGT]

[+] EMBL CD162864             [GTTTCTTCCTCGGGACTCTTCGTACCAAATGTAAGACACAAAAGAATCACATTCTAAAAAGACCAGTACCACCGGCTGCTCCTCCCACATCTATTTCACTTCTAGAAGAAGTAAGTCCACTACCTCTTCCAAAGAAAATCAACTCTCATCCAAAAGTCATAGAACCATTTTCTTGTGACATGTCTGTCATAAACTTTCAAGATGAAGTCCCAACTACCTGTTCACCAAGATGTGGATCCTTACGCTCAACTCCTCTTGTTTCCACTCCTGTACGAAAGGTCGCGGTAAAAAGTCGTGGAGACAATAATCGGTCATTTGGTCATATCTTTGATTTACGAGAATCTGATATTTCAAGTCAAACAGCTCACGACGAACAAATGACAGTTATAAATTTCGTAAAGCAAGGGCACAATGTTTTCTGT]




>consensus_372#0
GTTTCTTCCTCGGGACTCTTCGTACCAAATGTAAGACACAAAAGAATCACATTCTAAAAA
GACCAGTACCACCGGCTGCTCCTCCCACATCTATTTCACTTCTAGAAGAAGTAAGTCCAC
TACCTCTTCCAAAGAAAATCAACTCTCATCCAAAAGTCATAGAACCATTTTCTTGTGACA
TGTCTGTCATAAACTTTCAAGATGAAGTCCCAACTACCTGTTCACCAAGATGTGGATCCT
TACGCTCAACTCCTCTTGTTTCCACTCCTGTACGAAAGGTCGCGGTAAAAAGTCGTGGAG
ACAATAATCGGTCATTTGGTCATATCTTTGATTTACGAGAATCTGATATTTCAAGTCAAA
CAGCTCACGACGAACAAATGACAGTTATAAATTTCGTAAAGCAAGGGCACAATGTTTTCT
GT

consensusID : consensus_372#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [TTCACTTCTAGAAGAAGTAAGTCCACTACCTCTTCCAAAGAAAATCAACTCTCATCCAAAAGTCATAGAACCATTTTCTTGTGACATGTCTGTCATAAACTTTCAAGATGAAGTCCCAACTACCTGTTCACCAAGATGTGGATCCTTACGCTCAACTCCTCTTGTTTCCACTCCTGTACGAAAGGTCGCGGTAAAAAGTCGTGGAGACAGTTATAAATTTCGTAAAGCAAGGGCACAATGTTTTCTGTACTGGTGTGCTGGGACAGGAAAATCTCATCTCATTCGTCGTGTAGTTGGTTTACTTCCACCGGAGTATACTGCTGTAACGGCTAGTACAGGATCAGCTGCTAATCTCATTGGTGGATTGACAGTACACACATTTTCTGGATTAGGAG]

[+] EMBL CD157012             [TTCACTTCTAGAAGAAGTAAGTCCACTACCTCTTCCAAAGAAAATCAACTCTCATCCAAAAGTCATAGAACCATTTTCTTGTGACATGTCTGTCATAAACTTTCAAGATGAAGTCCCAACTACCTGTTCACCAAGATGTGGATCCTTACGCTCAACTCCTCTTGTTTCCACTCCTGTACGAAAGGTCGCGGTAAAAAGTCGTGGAGACAGTTATAAATTTCGTAAAGCAAGGGCACAATGTTTTCTGTACTGGTGTGCTGGGACAGGAAAATCTCATCTCATTCGTCGTGTAGTTGGTTTACTTCCACCGGAGTATACTGCTGTAACGGCTAGTACAGGATCAGCTGCTAATCTCATTGGTGGATTGACAGTACACACATTTTCTGGATTAGGAG]




>consensus_372#1
TTCACTTCTAGAAGAAGTAAGTCCACTACCTCTTCCAAAGAAAATCAACTCTCATCCAAA
AGTCATAGAACCATTTTCTTGTGACATGTCTGTCATAAACTTTCAAGATGAAGTCCCAAC
TACCTGTTCACCAAGATGTGGATCCTTACGCTCAACTCCTCTTGTTTCCACTCCTGTACG
AAAGGTCGCGGTAAAAAGTCGTGGAGACAGTTATAAATTTCGTAAAGCAAGGGCACAATG
TTTTCTGTACTGGTGTGCTGGGACAGGAAAATCTCATCTCATTCGTCGTGTAGTTGGTTT
ACTTCCACCGGAGTATACTGCTGTAACGGCTAGTACAGGATCAGCTGCTAATCTCATTGG
TGGATTGACAGTACACACATTTTCTGGATTAGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_372#0      GTTTCTTCCTCGGGACTCTTCGTACCAAATGTAAGACACAAAAGAATCACATTCTAAAAA 60
consensus_372#1      ------------------------------------------------------------
                                                                                 

consensus_372#0      GACCAGTACCACCGGCTGCTCCTCCCACATCTATTTCACTTCTAGAAGAAGTAAGTCCAC 120
consensus_372#1      ----------------------------------TTCACTTCTAGAAGAAGTAAGTCCAC 26
                                                       **************************

consensus_372#0      TACCTCTTCCAAAGAAAATCAACTCTCATCCAAAAGTCATAGAACCATTTTCTTGTGACA 180
consensus_372#1      TACCTCTTCCAAAGAAAATCAACTCTCATCCAAAAGTCATAGAACCATTTTCTTGTGACA 86
                     ************************************************************

consensus_372#0      TGTCTGTCATAAACTTTCAAGATGAAGTCCCAACTACCTGTTCACCAAGATGTGGATCCT 240
consensus_372#1      TGTCTGTCATAAACTTTCAAGATGAAGTCCCAACTACCTGTTCACCAAGATGTGGATCCT 146
                     ************************************************************

consensus_372#0      TACGCTCAACTCCTCTTGTTTCCACTCCTGTACGAAAGGTCGCGGTAAAAAGTCGTGGAG 300
consensus_372#1      TACGCTCAACTCCTCTTGTTTCCACTCCTGTACGAAAGGTCGCGGTAAAAAGTCGTGGAG 206
                     ************************************************************

consensus_372#0      ACAATAATCGGTCATTTGGT-CATATCTTTGATTTACGAGAATCTGATATTTCAAGTCAA 359
consensus_372#1      ACAGTTATAAATTTCGTAAAGCAAGGGCACAATGTTTTCTGTACTGGTGTGCTGGGACAG 266
                     *** * **   *    *    **        ** *        *** * *     * ** 

consensus_372#0      ACAGCTCACGACGAACAAATGACAGTTATAAATTTCGTAAAGCAAGGGCACAATGTTTT- 418
consensus_372#1      GAAAATCTCATCTCATTCGTCGT-GTAGTTGGTTTACTTCCACCGGAGTATACTGCTGTA 325
                       *  ** *  *  *    *    **  *   ***  *    *  * * * * ** * * 

consensus_372#0      -CTGT------------------------------------------------------- 422
consensus_372#1      ACGGCTAGTACAGGATCAGCTGCTAATCTCATTGGTGGATTGACAGTACACACATTTTCT 385
                      * *                                                        

consensus_372#0      ----------
consensus_372#1      GGATTAGGAG 395