These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3725#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [TGTTAGTTCATAATCGTCCCCAACTTTTTATAGAGAATGATTATATTCAATTGGAATTTGATTCTAAAACTGGTTATCTTCAAAAAATGTTGAATAAATTAACTGGACAATCTATGGATATGAAAATTAACTTTATACAATATAAAAGTTTAAAATTCGATTCACATAGTGGCGCTTATTTATTCATCCCTGATGGATTANGTGAACCTTCACCAAATCCAAAATCGTATCGCTACACTAAAGGTAATTGGGTGGATGAAGTGGTAGTTAACACGCAGTATGTTACACATACAGTTCGTTTGTACAAATCATCTGGTCTACAATCACAGTTCATTGAGATTGAAACCGTTGTCAATATAAAAGTCGGTCGTCCTACTGATATCGACTAATTAATGACATTCCAACCTAATCTTTCGATTA] [+] EMBL AW017323 [TGTTAGTTCATAATCGTCCCCAACTTTTTATAGAGAATGATTATATTCAATTGGAATTTGATTCTAAAACTGGTTATCTTCAAAAAATGTTGAATAAATTAACTGGACAATCTATGGATATGAAAATTAACTTTATACAATATAAAAGTTTAAAATTCGATTCACATAGTGGCGCTTATTTATTCATCCCTGATGGATTANGTGAACCTTCACCAAATCCAAAATCGTATCGCTACACTAAAGGTAATTGGGTGGATGAAGTGGTAGTTAACACGCAGTATGTTACACATACAGTTCGTTTGTACAAATCATCTGGTCTACAATCACAGTTCATTGAGATTGAAACCGTTGTCAATATAAAAGTCGGTCGTCCTACTGATATCGACTAATTAATGACATTCCAACCTAATCTTTCGATTA] consensusID : consensus_3725#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [ACAAATCATCTGGTCTACAATCACAGTTCATGGANATTGAAAAACGTTGTCAATATAAAAGTCGGTCGTCCTACTGATATCGACTTATTTATGAACAATACAAACTAATCTTTCGAATAAAGATCGAGTATTCTATACCGAATTCTAACTGCTTCCAGTTTTACGCAAAGAACAGTATCATGAATAAAATTCCTTTGGCAAGGGAAATGTTTATCCAATAGCATGTGGCGCCCTATATAGAAACAAGAAAATGAAATGAAAAGTGAATGAATAGGGAGCCATGTTGAAAACAATATCAACGAATTAAATCTATTCACTTCACATCCCTACTGGGTGTTAGTTAGTCCTAAAGTTGGTCAAATCAATGTTATGGGATTGG] [+] EMBL AA559358 [ACAAATCATCTGGTCTACAATCACAGTTCATGGANATTGAAAAACGTTGTCAATATAAAAGTCGGTCGTCCTACTGATATCGACTTATTTATGAACAATACAAACTAATCTTTCGAATAAAGATCGAGTATTCTATACCGAATTCTAACTGCTTCCAGTTTTACGCAAAGAACAGTATCATGAATAAAATTCCTTTGGCAAGGGAAATGTTTATCCAATAGCATGTGGCGCCCTATATAGAAACAAGAAAATGAAATGAAAAGTGAATGAATAGGGAGCCATGTTGAAAACAATATCAACGAATTAAATCTATTCACTTCACATCCCTACTGGGTGTTAGTTAGTCCTAAAGTTGGTCAAATCAATGTTATGGGATTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3725#0 -------TGTTAGTTCATAATC---GTCCCCAACTTTTTATAGAGAATGATTATATTCAA 50 consensus_3725#1 ACAAATCATCTGGTCTACAATCACAGTTCATGGANATTGAAAAACGTTGTCAATATAAAA 60 * ** * **** ** * ** * * * ** **** ** consensus_3725#0 TTGGAATTTGATTCTAAAACTGG-TTATCTTCAAAAAATGTTGAATAAATTAACTGGACA 109 consensus_3725#1 GTCGGTCGTCCTACTGATATCGACTTATTTATGAACAAT-----ACAAACTAATCTTTCG 115 * * * * ** * * * **** * ** *** * *** *** * consensus_3725#0 ATCTATGGATATGAAAATTAACTTTATACAATA-TAAAAGTTTAAAATTCGATTCACATA 168 consensus_3725#1 AA-TAAAGAT-CGAGTATT--CTATACCGAATTCTAACTGCTTCCAGTTTTACGCAAAGA 171 * ** *** ** *** ** ** *** *** * ** * ** * ** * * consensus_3725#0 GTGGCGCTTATTTATTCATCCCTGATGGATTANGTGAACCTTCACCAAATCCAAAATCGT 228 consensus_3725#1 ACAGTA-TCATGAATAAAATTCCTTTGG-CAAGGGAAATGTTT-----ATCCAATAGCAT 224 * * ** ** * * *** * * ** ** ****** * * * consensus_3725#0 ATCGCTACACTAAAGGTAATTGGGTGGATGAAGTGGTA-GTTAACACGCAGTATGTTACA 287 consensus_3725#1 GTGGC-GCCCTATATAGAAACAAGAAAATGAAATGAAAAGTGAATGAATAGGGAGCCATG 283 * ** * *** * ** * ***** ** * ** ** ** * * consensus_3725#0 CATACAGTTCGTTTGTACAAATCATCTGGTCTACAATCACAGTTCATTGAGATTGAAACC 347 consensus_3725#1 T-TGAAAACAATATCAACGAATTA---AATCTAT--TCACTTCACATCCCTACTGGGTGT 337 * * * * ** *** * **** **** *** * ** consensus_3725#0 GTTGTCAATATAAAAGTCGGTCGTCCTACTGATATCGACTAATTAATGACATTCCAACCT 407 consensus_3725#1 -TAGTTAGTCCTAAAGTTGGTCAAATCAATGTTATGGGATTGG----------------- 379 * ** * * ***** **** * ** *** * * consensus_3725#0 AATCTTTCGATTA 420 consensus_3725#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||