cluster # 3725

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Schistosoma mansoni
cluster # 3725 cluster # 3725 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3725#0 length = 420 sequences # 1

consensus_3725#1 length = 379 sequences # 1

consensusID : consensus_3725#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [TGTTAGTTCATAATCGTCCCCAACTTTTTATAGAGAATGATTATATTCAATTGGAATTTGATTCTAAAACTGGTTATCTTCAAAAAATGTTGAATAAATTAACTGGACAATCTATGGATATGAAAATTAACTTTATACAATATAAAAGTTTAAAATTCGATTCACATAGTGGCGCTTATTTATTCATCCCTGATGGATTANGTGAACCTTCACCAAATCCAAAATCGTATCGCTACACTAAAGGTAATTGGGTGGATGAAGTGGTAGTTAACACGCAGTATGTTACACATACAGTTCGTTTGTACAAATCATCTGGTCTACAATCACAGTTCATTGAGATTGAAACCGTTGTCAATATAAAAGTCGGTCGTCCTACTGATATCGACTAATTAATGACATTCCAACCTAATCTTTCGATTA]

[+] EMBL AW017323             [TGTTAGTTCATAATCGTCCCCAACTTTTTATAGAGAATGATTATATTCAATTGGAATTTGATTCTAAAACTGGTTATCTTCAAAAAATGTTGAATAAATTAACTGGACAATCTATGGATATGAAAATTAACTTTATACAATATAAAAGTTTAAAATTCGATTCACATAGTGGCGCTTATTTATTCATCCCTGATGGATTANGTGAACCTTCACCAAATCCAAAATCGTATCGCTACACTAAAGGTAATTGGGTGGATGAAGTGGTAGTTAACACGCAGTATGTTACACATACAGTTCGTTTGTACAAATCATCTGGTCTACAATCACAGTTCATTGAGATTGAAACCGTTGTCAATATAAAAGTCGGTCGTCCTACTGATATCGACTAATTAATGACATTCCAACCTAATCTTTCGATTA]




>consensus_3725#0
TGTTAGTTCATAATCGTCCCCAACTTTTTATAGAGAATGATTATATTCAATTGGAATTTG
ATTCTAAAACTGGTTATCTTCAAAAAATGTTGAATAAATTAACTGGACAATCTATGGATA
TGAAAATTAACTTTATACAATATAAAAGTTTAAAATTCGATTCACATAGTGGCGCTTATT
TATTCATCCCTGATGGATTANGTGAACCTTCACCAAATCCAAAATCGTATCGCTACACTA
AAGGTAATTGGGTGGATGAAGTGGTAGTTAACACGCAGTATGTTACACATACAGTTCGTT
TGTACAAATCATCTGGTCTACAATCACAGTTCATTGAGATTGAAACCGTTGTCAATATAA
AAGTCGGTCGTCCTACTGATATCGACTAATTAATGACATTCCAACCTAATCTTTCGATTA

consensusID : consensus_3725#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [ACAAATCATCTGGTCTACAATCACAGTTCATGGANATTGAAAAACGTTGTCAATATAAAAGTCGGTCGTCCTACTGATATCGACTTATTTATGAACAATACAAACTAATCTTTCGAATAAAGATCGAGTATTCTATACCGAATTCTAACTGCTTCCAGTTTTACGCAAAGAACAGTATCATGAATAAAATTCCTTTGGCAAGGGAAATGTTTATCCAATAGCATGTGGCGCCCTATATAGAAACAAGAAAATGAAATGAAAAGTGAATGAATAGGGAGCCATGTTGAAAACAATATCAACGAATTAAATCTATTCACTTCACATCCCTACTGGGTGTTAGTTAGTCCTAAAGTTGGTCAAATCAATGTTATGGGATTGG]

[+] EMBL AA559358             [ACAAATCATCTGGTCTACAATCACAGTTCATGGANATTGAAAAACGTTGTCAATATAAAAGTCGGTCGTCCTACTGATATCGACTTATTTATGAACAATACAAACTAATCTTTCGAATAAAGATCGAGTATTCTATACCGAATTCTAACTGCTTCCAGTTTTACGCAAAGAACAGTATCATGAATAAAATTCCTTTGGCAAGGGAAATGTTTATCCAATAGCATGTGGCGCCCTATATAGAAACAAGAAAATGAAATGAAAAGTGAATGAATAGGGAGCCATGTTGAAAACAATATCAACGAATTAAATCTATTCACTTCACATCCCTACTGGGTGTTAGTTAGTCCTAAAGTTGGTCAAATCAATGTTATGGGATTGG]




>consensus_3725#1
ACAAATCATCTGGTCTACAATCACAGTTCATGGANATTGAAAAACGTTGTCAATATAAAA
GTCGGTCGTCCTACTGATATCGACTTATTTATGAACAATACAAACTAATCTTTCGAATAA
AGATCGAGTATTCTATACCGAATTCTAACTGCTTCCAGTTTTACGCAAAGAACAGTATCA
TGAATAAAATTCCTTTGGCAAGGGAAATGTTTATCCAATAGCATGTGGCGCCCTATATAG
AAACAAGAAAATGAAATGAAAAGTGAATGAATAGGGAGCCATGTTGAAAACAATATCAAC
GAATTAAATCTATTCACTTCACATCCCTACTGGGTGTTAGTTAGTCCTAAAGTTGGTCAA
ATCAATGTTATGGGATTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3725#0      -------TGTTAGTTCATAATC---GTCCCCAACTTTTTATAGAGAATGATTATATTCAA 50
consensus_3725#1      ACAAATCATCTGGTCTACAATCACAGTTCATGGANATTGAAAAACGTTGTCAATATAAAA 60
                                * **  * ****   ** *       ** * * *   **   ****  **

consensus_3725#0      TTGGAATTTGATTCTAAAACTGG-TTATCTTCAAAAAATGTTGAATAAATTAACTGGACA 109
consensus_3725#1      GTCGGTCGTCCTACTGATATCGACTTATTTATGAACAAT-----ACAAACTAATCTTTCG 115
                       * *    *  * ** * *  *  **** *   ** ***     * *** ***     * 

consensus_3725#0      ATCTATGGATATGAAAATTAACTTTATACAATA-TAAAAGTTTAAAATTCGATTCACATA 168
consensus_3725#1      AA-TAAAGAT-CGAGTATT--CTATACCGAATTCTAACTGCTTCCAGTTTTACGCAAAGA 171
                      *  **  ***  **  ***  ** **   ***  ***  * **  * **  *  ** * *

consensus_3725#0      GTGGCGCTTATTTATTCATCCCTGATGGATTANGTGAACCTTCACCAAATCCAAAATCGT 228
consensus_3725#1      ACAGTA-TCATGAATAAAATTCCTTTGG-CAAGGGAAATGTTT-----ATCCAATAGCAT 224
                         *   * **  **  *   *   ***   * *  **  **      ****** * * *

consensus_3725#0      ATCGCTACACTAAAGGTAATTGGGTGGATGAAGTGGTA-GTTAACACGCAGTATGTTACA 287
consensus_3725#1      GTGGC-GCCCTATATAGAAACAAGAAAATGAAATGAAAAGTGAATGAATAGGGAGCCATG 283
                       * **  * *** *   **    *   ***** **  * ** **     **   *  *  

consensus_3725#0      CATACAGTTCGTTTGTACAAATCATCTGGTCTACAATCACAGTTCATTGAGATTGAAACC 347
consensus_3725#1      T-TGAAAACAATATCAACGAATTA---AATCTAT--TCACTTCACATCCCTACTGGGTGT 337
                        *  *     * *  ** *** *     ****   ****    ***    * **     

consensus_3725#0      GTTGTCAATATAAAAGTCGGTCGTCCTACTGATATCGACTAATTAATGACATTCCAACCT 407
consensus_3725#1      -TAGTTAGTCCTAAAGTTGGTCAAATCAATGTTATGGGATTGG----------------- 379
                       * ** * *   ***** ****     * ** *** *  *                    

consensus_3725#0      AATCTTTCGATTA 420
consensus_3725#1      -------------