These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [CTAGCTAAAAGGATTTCGGGAATCACATCTGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTAGAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCCGCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGCTCTTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCTGCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAGTTACTTGCAACAACTAGTGGACGTAAGAATTACATAAGCCTTGCTCTTGAGGATGACCAGGATTCCAATACCACTG] [-] EMBL CD170996 [CTAGCTAAAAGGATTTCGGGAATCACATCTGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTAGAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCCGCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGCTCTTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCTGCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAGTTACTTGCAACAACTAGTGGACGTAAGAATTACATAAGCCTTGCTCTTGAGGATGACCAGGATTCCAATACCACTG] consensusID : consensus_3737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [TTGGGCTGCGTTTTAGGCGGCGAAGTCCCTACCTATGGGACGGATTTCGGGAATCACATCTGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTAGAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCCGCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGTTCTTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCTGCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAGTTACTTGCAACAACTAGTGGACGTAAGAATACATAAGCCTTGCTC] [+] EMBL CD183624 [TTGGGCTGCGTTTTAGGCGGCGAAGTCCCTACCTATGGGACGGATTTCGGGAATCACATCTGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTAGAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCCGCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGTTCTTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCTGCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAGTTACTTGCAACAACTAGTGGACGTAAGAATACATAAGCCTTGCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3737#0 ----------------------------CTAGCTA---AAAGGATTTCGGGAATCACATC 29 consensus_3737#1 TTGGGCTGCGTTTTAGGCGGCGAAGTCCCTACCTATGGGACGGATTTCGGGAATCACATC 60 *** *** * ******************* consensus_3737#0 TGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTA 89 consensus_3737#1 TGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTA 120 ************************************************************ consensus_3737#0 GAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCC 149 consensus_3737#1 GAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCC 180 ************************************************************ consensus_3737#0 GCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGCTC 209 consensus_3737#1 GCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGTTC 240 ********************************************************* ** consensus_3737#0 TTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCT 269 consensus_3737#1 TTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCT 300 ************************************************************ consensus_3737#0 GCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAG 329 consensus_3737#1 GCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAG 360 ************************************************************ consensus_3737#0 TTACTTGCAACAACTAGTGGACGTAAGAATTACATAAGCCTTGCTCTTGAGGATGACCAG 389 consensus_3737#1 TTACTTGCAACAACTAGTGGACGTAAGAAT-ACATAAGCCTTGCTC-------------- 405 ****************************** *************** consensus_3737#0 GATTCCAATACCACTG 405 consensus_3737#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||