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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3737 cluster # 3737       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3737#0 length = 405 sequences # 1  
consensus_3737#1 length = 405 sequences # 1  

consensusID : consensus_3737#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence
                              [CTAGCTAAAAGGATTTCGGGAATCACATCTGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTAGAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCCGCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGCTCTTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCTGCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAGTTACTTGCAACAACTAGTGGACGTAAGAATTACATAAGCCTTGCTCTTGAGGATGACCAGGATTCCAATACCACTG]

[-] EMBL CD170996             [CTAGCTAAAAGGATTTCGGGAATCACATCTGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTAGAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCCGCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGCTCTTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCTGCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAGTTACTTGCAACAACTAGTGGACGTAAGAATTACATAAGCCTTGCTCTTGAGGATGACCAGGATTCCAATACCACTG]


>consensus_3737#0 CTAGCTAAAAGGATTTCGGGAATCACATCTGCTTTCCCTGGAGTCTTATAAACGAATTAT TGAGAGTGGATTACCAGTGTAGCAATTTAGAATTATTATAAACCACAAGCAGTTTAATAT CTACTATCTTGTTACTTCGCCAGTGTTCCGCAGCTATGTCAGATTCAGATTCAACTTTAC CGGCCACGGACGACTTTGGGTCAAGGCTCTTAGAATTTGACGAGTACTCTTTCGAACAGA CTGATAATACAGAAAGTGATGCTTTTTCTGCGTTTCTACCTCAATTTCGCTCCGTTGCCG AACAAAAGGTTTCGTTTCTTGATGAGCAGTTACTTGCAACAACTAGTGGACGTAAGAATT ACATAAGCCTTGCTCTTGAGGATGACCAGGATTCCAATACCACTG



consensusID : consensus_3737#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence
                              [TTGGGCTGCGTTTTAGGCGGCGAAGTCCCTACCTATGGGACGGATTTCGGGAATCACATCTGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTAGAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCCGCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGTTCTTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCTGCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAGTTACTTGCAACAACTAGTGGACGTAAGAATACATAAGCCTTGCTC]

[+] EMBL CD183624             [TTGGGCTGCGTTTTAGGCGGCGAAGTCCCTACCTATGGGACGGATTTCGGGAATCACATCTGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTAGAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCCGCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGTTCTTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCTGCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAGTTACTTGCAACAACTAGTGGACGTAAGAATACATAAGCCTTGCTC]


>consensus_3737#1 TTGGGCTGCGTTTTAGGCGGCGAAGTCCCTACCTATGGGACGGATTTCGGGAATCACATC TGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTA GAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCC GCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGTTC TTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCT GCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAG TTACTTGCAACAACTAGTGGACGTAAGAATACATAAGCCTTGCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3737#0      ----------------------------CTAGCTA---AAAGGATTTCGGGAATCACATC 29
consensus_3737#1      TTGGGCTGCGTTTTAGGCGGCGAAGTCCCTACCTATGGGACGGATTTCGGGAATCACATC 60
                                                  *** ***    * *******************

consensus_3737#0      TGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTA 89
consensus_3737#1      TGCTTTCCCTGGAGTCTTATAAACGAATTATTGAGAGTGGATTACCAGTGTAGCAATTTA 120
                      ************************************************************

consensus_3737#0      GAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCC 149
consensus_3737#1      GAATTATTATAAACCACAAGCAGTTTAATATCTACTATCTTGTTACTTCGCCAGTGTTCC 180
                      ************************************************************

consensus_3737#0      GCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGCTC 209
consensus_3737#1      GCAGCTATGTCAGATTCAGATTCAACTTTACCGGCCACGGACGACTTTGGGTCAAGGTTC 240
                      ********************************************************* **

consensus_3737#0      TTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCT 269
consensus_3737#1      TTAGAATTTGACGAGTACTCTTTCGAACAGACTGATAATACAGAAAGTGATGCTTTTTCT 300
                      ************************************************************

consensus_3737#0      GCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAG 329
consensus_3737#1      GCGTTTCTACCTCAATTTCGCTCCGTTGCCGAACAAAAGGTTTCGTTTCTTGATGAGCAG 360
                      ************************************************************

consensus_3737#0      TTACTTGCAACAACTAGTGGACGTAAGAATTACATAAGCCTTGCTCTTGAGGATGACCAG 389
consensus_3737#1      TTACTTGCAACAACTAGTGGACGTAAGAAT-ACATAAGCCTTGCTC-------------- 405
                      ****************************** ***************              

consensus_3737#0      GATTCCAATACCACTG 405
consensus_3737#1      ----------------
                                      




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)