These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3743#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [TGCATGATGTCATCTTATATATGATTGTAATGCAACGTGCACGAGCCTTGAAATATATTTAAAAAACTNCACCGTACATGTGAAAATGTATTTAAAGATGATATCGAAACATTACAAAACGCCAGAGAAAAGATTAATTCGGAGTTTCGAGCTAATCGAAATGAAACTGATGCAGAAAAAAATAAACGAATTATTGGTAAAAGCAGAAGATTGTGAAATACTAATCAGAACAACAGTTATTCAAATGGAAACTCATCGATGCTGAGAAAAATGTGTATAGAAATGGAATCTNCGTG] [+] EMBL AA559644 [TGCATGATGTCATCTTATATATGATTGTAATGCAACGTGCACGAGCCTTGAAATATATTTAAAAAACTNCACCGTACATGTGAAAATGTATTTAAAGATGATATCGAAACATTACAAAACGCCAGAGAAAAGATTAATTCGGAGTTTCGAGCTAATCGAAATGAAACTGATGCAGAAAAAAATAAACGAATTATTGGTAAAAGCAGAAGATTGTGAAATACTAATCAGAACAACAGTTATTCAAATGGAAACTCATCGATGCTGAGAAAAATGTGTATAGAAATGGAATCTNCGTG] consensusID : consensus_3743#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 143 fasta sequence [GAGTTTCGAGCTAATCGAAATGAAACTGATGCAGGAAAAATAAAACGAATTATTGGTAAAAGCAGAAGATTGTGAAATAACTAATCATAAACACCAGGTTATTCCAGATGGGACCTCATCGGATGACTGGGAAAAATTGTGGT] [+] EMBL AW186636 [GAGTTTCGAGCTAATCGAAATGAAACTGATGCAGGAAAAATAAAACGAATTATTGGTAAAAGCAGAAGATTGTGAAATAACTAATCATAAACACCAGGTTATTCCAGATGGGACCTCATCGGATGACTGGGAAAAATTGTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3743#0 TGCATGATGTCATCTTATATATGATTGTAATGCAACGTGCACGAGCCTTGAAATATATTT 60 consensus_3743#1 ------------------------------------------------------------ consensus_3743#0 AAAAAACTNCACCGTACATGTGAAAATGTATTTAAAGATGATATCGAAACATTACAAAAC 120 consensus_3743#1 ------------------------------------------------------------ consensus_3743#0 GCCAGAGAAAAGATTAATTCGGAGTTTCGAGCTAATCGAAATGAAACTGATGCAGAAAAA 180 consensus_3743#1 ---------------------GAGTTTCGAGCTAATCGAAATGAAACTGATGCAGGAAAA 39 ********************************** **** consensus_3743#0 AATAAACGAATTATTGGTAAAAGCAGAAGATTGTGAAATA-CTAATCA-GAACAACAG-T 237 consensus_3743#1 ATAAAACGAATTATTGGTAAAAGCAGAAGATTGTGAAATAACTAATCATAAACACCAGGT 99 * ************************************* ******* **** *** * consensus_3743#0 TATTC-AAATGGAAACTCATCG-ATG-CTGAGAAAAATGTGTATAGAAATGGAATCTNCG 294 consensus_3743#1 TATTCCAGATGGGACCTCATCGGATGACTGGGAAAAAT-TGTGGT--------------- 143 ***** * **** * ******* *** *** ******* *** consensus_3743#0 TG 296 consensus_3743#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||